AT3G28720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in 85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi - 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10782276..10784339 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 76477.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.42 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||
| Length | 687 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTHHRITTYF NGGSASIFLL LLLITTTSSS SPPIPGLDTF LTNQYRLDPK SSNDSFTSLS SSLKRSLSSS SIHFSSLSKS LLSLSISIPL NVRFIGDSFP 101: SSAASTLSEF ISAAVTNDNF HVISPSPDSS TNHKLVISHS LHLDASLSPQ SLSTRLDSTL KTLISSTTSS LRSNLLSIQY NPIDEIIKQE YEKEKHGDGG 201: VYIYLISLGS QAKPYAYSYS HGDSSAGFTK CLGSIWTGKD RYLWIDLSAG PVDYGPALSG DGVLPRGEFH PLAALHGRPK SEKALLADLA SLVYNAYQVL 301: IVPSLRIPVY FEDTLVVQFI HVYGSEVKDS SGLDLEFVKR TFMDEAESGG LLLGEQKLSF KSYSVNYREC SICSFAVSRG MNSYTSRFLF DNYTLIVSEY 401: LDSKHMHRAL TDSAEELRRV AGIVEEEGNE FARVLPVYVF DLDINTPLLL DRYHQSVAFR DMVIAVRTRG TQTVSDYTCN GRHVFVHTRD LERPLVGSIL 501: QSMWGVSSTH LTWSPRHNTT LVDYTWSIGQ TPFGPFSDIS SLSFVQKDAA KRNVILTSLN TTITSAIDVI DSAVAYGGDV ILRKQNRHSE FMQRWNLMQY 601: KLDKTVSALS HNEFEMALFY LRSASHDLYS VHSVVYLASQ RVEASLNCFK DPPFPWGTVS VSGFGLMAVG YVFSKRDRLF RNKRKQF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)