AT5G13390.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.985 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : no exine formation 1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Required for normal pollen development and lipid accumulation within the tapetum | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NO EXINE FORMATION 1 (NEF1); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:4292809..4296572 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124288.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.13 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.69 | ||||||||||||||||||||||||||||
| Length | 1123 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MMPPELQPRL FRPHITASTS EPTQSSSSYS PHMSPASTRN FIDRATPTSR SNNSRFSPSS FAYNGRIAIA LVPCAAFLLD LGGTPVVATL TIGLLISYIV 0101: DSLNVKFGGF LGIWMSLLAA QISFFFSSSL FSSFNSVPLG LLAAFLCAQT TFLIGCWTSL QFKWLQLENP SIVVALERLL FACVPFTASS FFAWATISAV 0201: GMNNSSYYFL LFACVFYWIF AIPRVSSFKT KQEVKYHGGE IPDDSFILGQ LESCFLSLNL MFMPLLFHVA SHYSVIFSSA ASVCDLLLLF FIPFLFQLYA 0301: STRGGLWWVT KDSHQLQSIR IVNGAIAMVI IVICLEIRVV FRSFGKYIQV PPPLNYLLVT TTLLGGAAGA GASVLGMISS ALSSAFFTAL SVIVSSAGAI 0401: VVGFPVLFTP LPAVAGLYFA RFFTKKSVPS YFAFVALGSL MVIWFVMHNY WDLNIWLAGM FLKSFCKLIV ANIIIAMVIP GLVLLPSKFH FLTEAGMVTH 0501: ALLLCYIEDR FFNYSSIYYY GMEDDVMYPS YMVILTSLIG LAVVRRLFAD HRIGQKAVWI LTCLYSAKLA MLFLSSKSIV WVSAALLLAV SPPLLLYKEK 0601: SKSASKMKPW QGYAHAVVVA VSVWFCRETI FDALQWWHGR PPSDGLLLGS CIVLIGLACI PIVAFHFSHV LSAKRSLVLV VATGCMFILM QPPMPMTWSY 0701: HSDMIKAARQ SADDISIYGF MASKPTWPSW LLIVSLLLIL AAATSLIPIK YVVELRAFYS IAMGLALGVY ISAEFFLQAA VLHALIVVTL VCASVFVIFT 0801: HFPSASSTKL LPWVFALLVA LFPVTYLLEG QVRIKNDLNE NVTWGWDTRE EDKKVTTMLA IEGARTSLLG LYAAIFMLIA LLIKFELTSL LREKFSERSG 0901: QSKTQGGARG IFPTRMRLMQ QRRATSIQSF AVEKMSEEGA AWMPSVGNVA TIMCFAICLI LNIHLSGGSS QAIFFLAPIL LLLNQDSDLL SGFGDKQRYF 1001: PVTVAISTYL ALSSLYTVWE EVWFGGNTGW GVEIGGREWF FAVKNLALLI LTAPGHIIFN RYVWSYTTKH TDASPMLTVP LSFAAVIITD VFQVRVLGVL 1101: GIVYSAAQYV ISRQQYMKGL RYI |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)