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AT3G51050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26748395 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FG-GAP repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FG-GAP repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell-matrix adhesion; LOCATED IN: integrin complex, integral to membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 99 Blast hits to 94 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH34eggNOG:ENOG410ZWAMEMBL:CP002686EnsemblPlants:AT3G51050
EnsemblPlants:AT3G51050.1entrez:824269GeneID:824269GO:GO:0005774
GO:GO:0005783GO:GO:0005794GO:GO:0016021Gramene:AT3G51050.1
hmmpanther:PTHR34284hmmpanther:PTHR34284:SF1InParanoid:F4J381KEGG:ath:AT3G51050
OMA:HKRKTLKPaxDb:F4J381PRIDE:F4J381Proteomes:UP000006548
RefSeq:NP_190674.2SUPFAM:SSF69318TAIR:AT3G51050TMHMM:TMhelix
UniGene:At.852UniProt:F4J381
Coordinates (TAIR10) chr3:+:18954023..18957698
Molecular Weight (calculated) 77679.60 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.34
Length 698 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKRDLAILM LSGFAIFFTL QHEGDFAFKE AWFHLYDEYP VKYEADRLPP PIVADLNGDG KKEVLVATND AKIQVLEPHS RRVDEGFSEA RVLAEITLLP
101: DKIRVASGRR AVAMATGVID RYYKNGTPQK QVVVVVTSGW SVLCFDHNLK KLWETNLQED FPHNAHHREI AISISNYTLK HGDTGLVIVG GRMEMQPYNH
201: MDPFEELGMT AQNADQHRRS ATENQASEDS GAINLRHFSV YAFAGKTGLL RWSKKTDDVE AHTSDASQLI PQHNYKLDVH ALNSRHPGEF ECREFRESIL
301: SVMPHRWDRR EDTLLKLAHF RRHKRKTLKK QAGSKSTAYP FHKPEEHTPA GKDLSRKIPK LIGKAARYAG SAKPKKGMQY IPTITNYTKL WWVPNVVVAH
401: QKEGIEAIHL PTGRTLCKLS LLEGGLHADI NGDGVLDHVQ TVGGNVGERT VVSGSMEVLK PCWAVATSGV PIREQLFNVS ICHHSPFNFL HYGGDYSRHF
501: AQARDTSTLE IATPILIPRD DGHKHRKGSH GDVIFLTNRG EVTSYTPDVH GHDAVWQWQL QTEATWSNLP SPSGLTESGT VVPTLKPFSL RIHDNQPMIL
601: AGGDQAAVII SPGGSILASI ELPSQPTHAL ITDDFSNDGL TDVIVMTSNG VYGFVQTRQP GALFFSSLVG CLLVVMAVIF VTQHLNSIQG KPRPSSSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)