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AT4G11380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Adaptin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1); Has 3548 Blast hits to 3463 proteins in 290 species: Archae - 10; Bacteria - 21; Metazoa - 1495; Fungi - 876; Plants - 441; Viruses - 0; Other Eukaryotes - 705 (source: NCBI BLink).
Protein Annotations
BioGrid:12040eggNOG:COG5096eggNOG:KOG1061EMBL:AF216386
EMBL:AK227093EMBL:AL096882EMBL:AL161531EMBL:AY093155
EMBL:BT010362EMBL:CP002687EnsemblPlants:AT4G11380EnsemblPlants:AT4G11380.1
entrez:826741ExpressionAtlas:Q9SUS3Gene3D:1.25.10.10Gene3D:2.60.40.1150
Gene3D:3.30.310.10GeneID:826741Genevisible:Q9SUS3GO:GO:0005794
GO:GO:0006886GO:GO:0008565GO:GO:0016192GO:GO:0030131
GO:GO:0030665hmmpanther:PTHR11134hmmpanther:PTHR11134:SF14HOGENOM:HOG000163270
InParanoid:Q9SUS3InterPro:IPR002553InterPro:IPR008152InterPro:IPR009028
InterPro:IPR011989InterPro:IPR012295InterPro:IPR013037InterPro:IPR013041
InterPro:IPR015151InterPro:IPR016024InterPro:IPR016342InterPro:IPR026739
iPTMnet:Q9SUS3PANTHER:PTHR11134PaxDb:Q9SUS3Pfam:PF01602
Pfam:PF02883Pfam:PF09066Pfam:Q9SUS3PhylomeDB:Q9SUS3
PIR:T13029PIRSF:PIRSF002291PRIDE:Q9SUS3PRO:PR:Q9SUS3
ProteinModelPortal:Q9SUS3Proteomes:UP000006548RefSeq:NP_192877.1SMART:SM00809
SMART:SM01020SMR:Q9SUS3STRING:3702.AT4G11380.2SUPFAM:SSF48371
SUPFAM:SSF49348SUPFAM:SSF55711TAIR:AT4G11380UniGene:At.3659
UniProt:Q9SUS3
Coordinates (TAIR10) chr4:+:6920608..6925444
Molecular Weight (calculated) 99377.10 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.06
Length 894 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSSSPIFEI
201: NSTTLTKLLT ALNECTEWGQ VFILDALSKY KAADPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDPSL LDELLTNIST LSSVYHKPPE AFVTRLKTTV QKTEDEDFAE
601: GSEAGYSSSN PVDSAASPPG NIPQPSGRQP APAVPAPVPD LLGDLMGLDN AAIVPVDDPI TQSGPPLPVV VPASSGQGLQ ISAQLSRKDG QVFYSMLFEN
701: NSQSVLDGFM IQFNKNTFGL AAAGSLQIPP LHPATSARTM LPMVLFQNMS AGPPSSLLQV AVKNNQQPVW YFTDKIILHA LFGEDGRMER GTFLETWRSL
801: PDSNEVLKEF PGITITSVES TIELLTAFNM FFIAKRKNGN QDVIYLSAKD PRDVPFLIEL TAMVGQPGLK CAVKTPTPEI APLFFEALEL LFKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)