AT4G11380.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Adaptin family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1); Has 3548 Blast hits to 3463 proteins in 290 species: Archae - 10; Bacteria - 21; Metazoa - 1495; Fungi - 876; Plants - 441; Viruses - 0; Other Eukaryotes - 705 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:6920608..6925444 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 99377.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 894 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP 101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSSSPIFEI 201: NSTTLTKLLT ALNECTEWGQ VFILDALSKY KAADPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY 301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK 401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP 501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDPSL LDELLTNIST LSSVYHKPPE AFVTRLKTTV QKTEDEDFAE 601: GSEAGYSSSN PVDSAASPPG NIPQPSGRQP APAVPAPVPD LLGDLMGLDN AAIVPVDDPI TQSGPPLPVV VPASSGQGLQ ISAQLSRKDG QVFYSMLFEN 701: NSQSVLDGFM IQFNKNTFGL AAAGSLQIPP LHPATSARTM LPMVLFQNMS AGPPSSLLQV AVKNNQQPVW YFTDKIILHA LFGEDGRMER GTFLETWRSL 801: PDSNEVLKEF PGITITSVES TIELLTAFNM FFIAKRKNGN QDVIYLSAKD PRDVPFLIEL TAMVGQPGLK CAVKTPTPEI APLFFEALEL LFKA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)