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AT1G60780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23766365 (2013): Golgi trans-Golgi network early endosome
  • PMID:23543752 (2013): Golgi trans-Golgi network
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Clathrin adaptor complexes medium subunit family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HAPLESS 13 (HAP13); INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G10730.1); Has 2206 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1107; Fungi - 506; Plants - 213; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).
Protein Annotations
BioGrid:27596eggNOG:ENOG410XPFSeggNOG:KOG0937EMBL:AC002292
EMBL:AY099652EMBL:BT002144EMBL:CP002684EnsemblPlants:AT1G60780
EnsemblPlants:AT1G60780.1entrez:842372GeneID:842372Genevisible:O22715
GO:GO:0005794GO:GO:0005829GO:GO:0006886GO:GO:0016192
GO:GO:0030131GO:GO:0030665GO:GO:0031901Gramene:AT1G60780.1
hmmpanther:PTHR10529HOGENOM:HOG000173247InParanoid:O22715InterPro:IPR001392
InterPro:IPR011012InterPro:IPR018240InterPro:IPR022775InterPro:IPR028565
iPTMnet:O22715KEGG:ath:AT1G60780KO:K12393OMA:AQIESHS
PaxDb:O22715Pfam:O22715Pfam:PF00928Pfam:PF01217
Pfscan:PS51072PhylomeDB:O22715PIR:C96633PRIDE:O22715
PRINTS:PR00314PRO:PR:O22715ProMEX:O22715PROSITE:PS00990
PROSITE:PS00991PROSITE:PS51072ProteinModelPortal:O22715Proteomes:UP000006548
RefSeq:NP_176277.1scanprosite:PS00990scanprosite:PS00991SMR:O22715
STRING:3702.AT1G60780.1SUPFAM:0038852SUPFAM:SSF49447SUPFAM:SSF64356
TAIR:AT1G60780tair10-symbols:HAP13UniGene:At.36589UniProt:O22715
Coordinates (TAIR10) chr1:-:22369289..22371885
Molecular Weight (calculated) 49034.90 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.23
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)