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AT1G30630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24124904 (2013): plastid
  • PMID:24012629 (2013): nucleus
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:14505352 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Coatomer epsilon subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Coatomer epsilon subunit; FUNCTIONS IN: protein transporter activity, structural molecule activity, binding; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Coatomer, epsilon subunit (InterPro:IPR006822); BEST Arabidopsis thaliana protein match is: Coatomer epsilon subunit (TAIR:AT2G34840.1); Has 442 Blast hits to 442 proteins in 180 species: Archae - 6; Bacteria - 14; Metazoa - 175; Fungi - 90; Plants - 92; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
BioGrid:25178DNASU:839943eggNOG:ENOG410XS5PeggNOG:KOG3081
EMBL:AC007060EMBL:AF348588EMBL:AF370325EMBL:AY063113
EMBL:AY087474EMBL:CP002684EnsemblPlants:AT1G30630EnsemblPlants:AT1G30630.1
entrez:839943Gene3D:1.25.40.10GeneID:839943Genevisible:Q9SA78
GO:GO:0005198GO:GO:0005774GO:GO:0006890GO:GO:0015031
GO:GO:0030663Gramene:AT1G30630.1hmmpanther:PTHR10805hmmpanther:PTHR10805:SF1
HOGENOM:HOG000205825InParanoid:Q9SA78InterPro:IPR006822InterPro:IPR011990
iPTMnet:Q9SA78KEGG:ath:AT1G30630KO:K17268OMA:TWAELIC
PANTHER:PTHR10805PaxDb:Q9SA78Pfam:PF04733Pfam:Q9SA78
PhylomeDB:Q9SA78PIR:F86431PIRSF:PIRSF016478PRIDE:Q9SA78
PRO:PR:Q9SA78ProteinModelPortal:Q9SA78Proteomes:UP000006548Reactome:R-ATH-199997
Reactome:R-ATH-6807878RefSeq:NP_174351.1SMR:Q9SA78STRING:3702.AT1G30630.1
SUPFAM:SSF48452TAIR:AT1G30630UniGene:At.21622UniProt:Q9SA78
Coordinates (TAIR10) chr1:-:10858546..10860173
Molecular Weight (calculated) 32603.90 Da
IEP (calculated) 5.33
GRAVY (calculated) -0.13
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD
101: PTVGNNAIIR LIAGTIFMHE EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN LAVGGSKIQE AYLIFQDFSE
201: KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)