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AT2G47170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ras-related small GTP-binding family protein
Curator
Summary (TAIR10)
Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
Computational
Description (TAIR10)
ARF1A1C; FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: Golgi-associated vesicle; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor A1F (TAIR:AT1G10630.1); Has 15041 Blast hits to 15022 proteins in 509 species: Archae - 14; Bacteria - 51; Metazoa - 7725; Fungi - 1942; Plants - 2032; Viruses - 3; Other Eukaryotes - 3274 (source: NCBI BLink).
Protein Annotations
BioGrid:4665eggNOG:COG1100eggNOG:KOG0070EMBL:AC002337
EMBL:AC007236EMBL:AY074859EMBL:AY087342EMBL:AY142032
EMBL:CP002685EMBL:M95166EnsemblPlants:AT2G47170EnsemblPlants:AT2G47170.1
entrez:819330Gene3D:3.40.50.300GeneID:819330Genevisible:P36397
GO:GO:0005525GO:GO:0005768GO:GO:0005794GO:GO:0007264
GO:GO:0015031GO:GO:0016004GO:GO:0016192GO:GO:0043085
Gramene:AT2G47170.1hmmpanther:PTHR11711hmmpanther:PTHR11711:SF181HOGENOM:HOG000163691
IntAct:P36397InterPro:IPR005225InterPro:IPR006689InterPro:IPR024156
InterPro:IPR027417iPTMnet:P36397KEGG:ath:AT2G47170KO:K07937
OMA:NDNERVSPaxDb:P36397PDB:3AQ4PDBsum:3AQ4
Pfam:P36397Pfam:PF00025Pfscan:PS51417PhylomeDB:P36397
PIR:S28875PRIDE:P36397PRINTS:PR00328PRO:PR:P36397
PROSITE:PS51417ProteinModelPortal:P36397Proteomes:UP000006548Reactome:R-ATH-1660514
Reactome:R-ATH-199997Reactome:R-ATH-421837RefSeq:NP_182239.1SMR:P36397
STRING:3702.AT2G47170.1SUPFAM:SSF52540TAIR:AT2G47170tair10-symbols:ARF1A1C
TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.12215UniGene:At.23262
UniProt:P36397
Coordinates (TAIR10) chr2:+:19367264..19368518
Molecular Weight (calculated) 20609.80 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.21
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLSFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)