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AT3G04120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28524096 (2017): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23323832 (2013): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15157177 (2004): extracellular region
  • PMID:14671022 (2004): mitochondrion
  • PMID:14617066 (2003): nucleus
  • PMID:12492832 (2002): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glyceraldehyde-3-phosphate dehydrogenase C subunit 1
Curator
Summary (TAIR10)
encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.
Computational
Description (TAIR10)
glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (GAPC1); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 11 processes; LOCATED IN: in 8 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C2 (TAIR:AT1G13440.1); Has 25372 Blast hits to 25360 proteins in 6350 species: Archae - 71; Bacteria - 10995; Metazoa - 2358; Fungi - 2851; Plants - 3864; Viruses - 0; Other Eukaryotes - 5233 (source: NCBI BLink).
Protein Annotations
BioGrid:4902BRENDA:1.2.1.12EC:1.2.1.12eggNOG:COG0057
eggNOG:KOG0657EMBL:AC016829EMBL:AK226804EMBL:AY052267
EMBL:AY060521EMBL:AY087651EMBL:AY140084EMBL:CP002686
EMBL:F20074EMBL:M64116EMBL:M64119EnsemblPlants:AT3G04120
EnsemblPlants:AT3G04120.1entrez:819567Gene3D:3.40.50.720GeneID:819567
Genevisible:P25858GO:GO:0003677GO:GO:0004365GO:GO:0005507
GO:GO:0005634GO:GO:0005739GO:GO:0005740GO:GO:0005774
GO:GO:0005829GO:GO:0005886GO:GO:0006094GO:GO:0006096
GO:GO:0006979GO:GO:0008886GO:GO:0009408GO:GO:0009507
GO:GO:0009651GO:GO:0009744GO:GO:0010154GO:GO:0016020
GO:GO:0042542GO:GO:0046686GO:GO:0048046GO:GO:0048316
GO:GO:0050661GO:GO:0051287GO:GO:0051775Gramene:AT3G04120.1
gramene_pathway:1.2.1.12gramene_pathway:GLYCOLYSISgramene_pathway:PWY-1042gramene_pathway:PWYQT-4428
gramene_plant_reactome:1119570gramene_plant_reactome:6874315hmmpanther:PTHR10836hmmpanther:PTHR10836:SF53
HOGENOM:HOG000071678InParanoid:P25858IntAct:P25858InterPro:IPR006424
InterPro:IPR016040InterPro:IPR020828InterPro:IPR020829InterPro:IPR020830
InterPro:IPR020831iPTMnet:P25858KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12
KEGG:ath:AT3G04120KO:K00134MINT:MINT-8060263OMA:LICHMAK
PANTHER:PTHR10836PaxDb:P25858Pfam:P25858Pfam:PF00044
Pfam:PF02800PhylomeDB:P25858PIR:JQ1287PIRSF:PIRSF000149
PRIDE:P25858PRINTS:PR00078PRO:PR:P25858PROSITE:PS00071
ProteinModelPortal:P25858Proteomes:UP000006548Reactome:R-ATH-70171Reactome:R-ATH-70263
RefSeq:NP_187062.1scanprosite:PS00071SMART:SM00846SMR:P25858
STRING:3702.AT3G04120.1SUPFAM:SSF51735SUPFAM:SSF55347TAIR:AT3G04120
tair10-symbols:GAPCtair10-symbols:GAPC-1tair10-symbols:GAPC1TIGRfam:TIGR01534
TIGRFAMs:TIGR01534UniGene:At.22963UniGene:At.24406UniGene:At.71328
UniPathway:UPA00109UniProt:P25858
Coordinates (TAIR10) chr3:+:1081077..1083131
Molecular Weight (calculated) 36916.30 Da
IEP (calculated) 7.15
GRAVY (calculated) -0.13
Length 338 amino acids
Sequence (TAIR10)
(BLAST)
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)