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AT5G56350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pyruvate kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT4G26390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G56350-MONOMEREC:2.7.1.40eggNOG:COG0469eggNOG:KOG2323
EMBL:AB009049EMBL:AY054551EMBL:AY064679EMBL:AY087091
EMBL:CP002688EnsemblPlants:AT5G56350EnsemblPlants:AT5G56350.1entrez:835735
Gene3D:2.40.33.10Gene3D:3.20.20.60Gene3D:3.40.1380.20GeneID:835735
GO:GO:0000287GO:GO:0004743GO:GO:0005829GO:GO:0016301
GO:GO:0030955Gramene:AT5G56350.1gramene_pathway:2.7.1.40gramene_pathway:GLYCOLYSIS
gramene_pathway:PWY-1042gramene_pathway:PWY-5723hmmpanther:PTHR11817hmmpanther:PTHR11817:SF5
HOGENOM:HOG000021559IntAct:Q9FM97InterPro:IPR001697InterPro:IPR011037
InterPro:IPR015793InterPro:IPR015794InterPro:IPR015795InterPro:IPR015806
InterPro:IPR015813InterPro:IPR018209KEGG:00010+2.7.1.40KEGG:00230+2.7.1.40
KEGG:00620+2.7.1.40KEGG:ath:AT5G56350KO:K00873OMA:CCENSAM
PANTHER:PTHR11817Pfam:PF00224Pfam:PF02887PhylomeDB:Q9FM97
PRINTS:PR01050PROSITE:PS00110Proteomes:UP000006548Reactome:R-ATH-70171
RefSeq:NP_200446.1scanprosite:PS00110SMR:Q9FM97STRING:3702.AT5G56350.1
SUPFAM:SSF50800SUPFAM:SSF51621SUPFAM:SSF52935TAIR:AT5G56350
TIGRfam:TIGR01064TIGRFAMs:TIGR01064UniGene:At.20243UniGene:At.74779
UniPathway:UPA00109UniProt:Q9FM97
Coordinates (TAIR10) chr5:-:22820254..22822529
Molecular Weight (calculated) 54414.50 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.01
Length 498 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMIEQRPKT KIVCTLGPAS RSVPMVEKLL RAGMNVARFN FSHGSHEYHQ ETLDNLHQAM LNTGILCAVM LDTKGPEIRT GFLKDGKPIQ LKQGQEITIS
101: TDYDLKGDEN TICMSYKKLA VDVNPGMVIL CADGTISLLV LSCDKENGTV RCRCENSAML GERKNVNLPG VVVDLPTLTE KDKEDIMQWG VPNQIDMIAL
201: SFVRKGSDLV QVRKLLGKHA KNILLMSKVE NQEGVANFDD ILVNSDAFMI ARGDLGMEIP IEKIFLAQKV MIYKCNIQGK PVVTATQMLE SMIKSPRPTR
301: AEATDVANAV LDGTDCVMLS GETAAGAYPE LAVRTMAKIC VEAESTLDYG DVFKRIMLYS PVPMSPLESL ASSAVRTANS ARATLIMVLT RGGSTARLVA
401: KYRPGMPILS VVVPEIKTDF FDWSCSDESP ARHSLIFRGL IPVLYAGSAR ASHDESTEEA IEFATQYGKE KELCKTGDSV VALLRVGNAS VIKILTVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)