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AT3G58180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.705
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: lyase activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: phycobilisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G62530.1); Has 1934 Blast hits to 1064 proteins in 388 species: Archae - 226; Bacteria - 670; Metazoa - 295; Fungi - 345; Plants - 90; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).
Protein Annotations
EC:1.14.99.29eggNOG:COG1413eggNOG:KOG0567EMBL:AK317235
EnsemblPlants:AT3G58180EnsemblPlants:AT3G58180.1entrez:824987ExpressionAtlas:B9DGP9
Gene3D:1.25.10.10GeneID:824987GO:GO:0008612GO:GO:0019135
GO:GO:0046872Gramene:AT3G58180.1gramene_pathway:1.14.99.29gramene_pathway:PWY-5905
HAMAP:MF_03101hmmpanther:PTHR12697InterPro:IPR004155InterPro:IPR011989
InterPro:IPR016024InterPro:IPR027517KEGG:ath:AT3G58180KO:K06072
OMA:PEFQYADPaxDb:B9DGP9Pfam:PF03130Pfam:PF13646
Pfam:Q94JW0PhylomeDB:B9DGP9PRIDE:B9DGP9ProteinModelPortal:B9DGP9
RefSeq:NP_567062.1SMART:SM00567SMR:B9DGP9STRING:3702.AT3G58180.1
SUPFAM:SSF48371TAIR:AT3G58180UniGene:At.19133UniPathway:UPA00354
UniProt:B9DGP9UniProt:Q94JW0
Coordinates (TAIR10) chr3:+:21544189..21545981
Molecular Weight (calculated) 34094.40 Da
IEP (calculated) 4.59
GRAVY (calculated) -0.12
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MESNGSVSSM VNLEKFLCER LVDQSQPISE RFRALFSLRN LKGPGPRNAL ILASRDSSNL LAHEAAFALG QMQDAEAIPA LESVLNDMSL HPIVRHEAAE
101: ALGAIGLAGN VNILKKSLSS DPAQEVRETC ELALKRIEDM SNVDAENQSS TTEKSPFMSV DPAGPAASFS SVHQLRQVLL DETKGMYERY AALFALRNHG
201: GEEAVSAIVD SLSASSALLR HEVAYVLGQL QSKTALATLS KVLRDVNEHP MVRHEAAEAL GSIADEQSIA LLEEFSKDPE PIVAQSCEVA LSMLEFENSG
301: KSFEFFFTQD PLVH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)