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AT1G64190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:22923678 (2012): plastid
  • PMID:22550958 (2012): plastid
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 6-phosphogluconate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding domain (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT5G41670.2); Has 12957 Blast hits to 12851 proteins in 2621 species: Archae - 92; Bacteria - 8657; Metazoa - 674; Fungi - 254; Plants - 330; Viruses - 4; Other Eukaryotes - 2946 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G64190-MONOMERBioGrid:27945EC:1.1.1.44eggNOG:COG0362
eggNOG:KOG2653EMBL:AC007764EMBL:AK227596EMBL:BT004568
EMBL:CP002684EnsemblPlants:AT1G64190EnsemblPlants:AT1G64190.1entrez:842724
Gene3D:1.10.1040.10Gene3D:1.20.5.320Gene3D:3.40.50.720GeneID:842724
Genevisible:Q9SH69GO:GO:0004616GO:GO:0005829GO:GO:0006098
GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009651
GO:GO:0016020GO:GO:0019521Gramene:AT1G64190.1gramene_pathway:1.1.1.44
gramene_pathway:OXIDATIVEPENT-PWYhmmpanther:PTHR11811hmmpanther:PTHR11811:SF33HOGENOM:HOG000255147
InParanoid:Q9SH69IntAct:Q9SH69InterPro:IPR006113InterPro:IPR006114
InterPro:IPR006115InterPro:IPR006183InterPro:IPR008927InterPro:IPR012284
InterPro:IPR013328InterPro:IPR016040iPTMnet:Q9SH69KEGG:00030+1.1.1.44
KEGG:00480+1.1.1.44KEGG:ath:AT1G64190KO:K00033OMA:HSCVVYD
PaxDb:Q9SH69Pfam:PF00393Pfam:PF03446Pfam:Q9SH69
PhylomeDB:Q9SH69PIRSF:PIRSF000109PRIDE:Q9SH69PRINTS:PR00076
PRO:PR:Q9SH69ProteinModelPortal:Q9SH69Proteomes:UP000006548Reactome:R-ATH-71336
RefSeq:NP_176601.1SMART:SM01350SMR:Q9SH69STRING:3702.AT1G64190.1
SUPFAM:SSF48179SUPFAM:SSF51735TAIR:AT1G64190TIGRfam:TIGR00873
TIGRFAMs:TIGR00873UniGene:At.43563UniGene:At.70356UniPathway:UPA00115
UniProt:Q9SH69
Coordinates (TAIR10) chr1:-:23825549..23827012
Molecular Weight (calculated) 53380.50 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.27
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MESAALSRIG LAGLAVMGQN LALNIAEKGF PISVYNRTTS KVDETLDRAA VEGNLPVSGQ YSPRDFVLSI QRPRSLIILV KAGAPVDQTI DAFSEYMEPG
101: DCIIDGGNEW YQNTERRISE AEQKGLLYLG MGVSGGEEGA RNGPSLMPGG SFQAYDNIKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNEEL AEIFTEWNSG ELESFLVEIT SDIFRVKDEF GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLR EAGLKEEIGS ASSGIDKKRL VDDVRQALYA SKICSYAQGM NLLRAKSLEK SWNLNFGELA RIWKGGCIIR AVFLDRIKKA YQRNPDLASL
401: VVDPEFAKEM VQRQAAWRRV VGLAVSAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKNH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)