AT4G10320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tRNA synthetase class I (I, L, M and V) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tRNA synthetase class I (I, L, M and V) family protein; FUNCTIONS IN: isoleucine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion, tRNA aminoacylation for protein translation; LOCATED IN: cytosol; EXPRESSED IN: male gametophyte, guard cell, epidermis, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Isoleucyl-tRNA synthetase (InterPro:IPR018353), Isoleucyl-tRNA synthetase, class Ia (InterPro:IPR002301), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Isoleucyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015905), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT5G49030.3); Has 38868 Blast hits to 32849 proteins in 3074 species: Archae - 1055; Bacteria - 22228; Metazoa - 780; Fungi - 735; Plants - 304; Viruses - 0; Other Eukaryotes - 13766 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:6397526..6404509 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 135491.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1190 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEEVCEGKEF SFPRQEEDVL SFWTEIDAFK TQLKRTENLP EYIFYDGPPF ATGLPHYGHI LAGTIKDIVT RYQTMTGHHV TRRFGWDCHG LPVENEIDRK 0101: LNIKRRDEVI KMGIDKYNEE CRSIVTRYVA EWEKVITRCG RWIDFKNDYK TMDLPFMESV WWVFSQLWEK NLVYRGFKVM PYSTGCKTPL SNFEAGQNYK 0201: EVPDPEIMVT FPVIGDQDNA AFVAWTTTPW TLPSNLALCV NAKFVYVKVR NKNTGKVYIV AESRLSALPT DKPKAKLSNG PAGDTKKANP KAKGAKPESA 0301: ADSYEVLEKF NGASLVGKKY EPLFDYFSDF SSEAFRVVAD DYVTDDSGTG IVHCAPAFGE DDYRVCLLNK IIKKGENLVV AVDDDGLFTE RITHFSGRYV 0401: KDADKDIIEA VKAKGRLVKT GSFTHSYPFC WRSDTPLIYR AVPSWFVRVE QLKEKLLKSN EQTEWVPGYV KDKRFHNWLE NARDWAISRS RFWGTPLPIW 0501: ISDDGEEVVI MDSVEKLEKL SGVKVFDLHR HHIDHITIPS SRGDEFGVLR RVEDVFDCWF ESGSMPYAYI HYPFENKELF EKNFPGDFVA EGLDQTRGWF 0601: YTLMVLSTAL FEKPAFKNLI CNGLVLAEDG KKMAKKLRNY PPPLEVIDEY GADAVRLYLI NSPVVRAEPL RFKKEGVLGV VKDVFLPWYN AYRFLVQNAK 0701: RLETEGGVPF VPTDLATIQS ANILDQWIHS ATQSLVRFVR EEMDAYRLYT VVPRLLKFLD NLTNIYVRFN RKRLKGRTGE DDCHTALSTL FNVLLTSCKV 0801: MAPFTPFFTE TLYQNLRKAC KGSEESVHYC SIPPREGMEG ERIELSVTRM MKIIDLARNI RERNKLPLKT PLKEMIVVHP DADFLNDITG VLREYVLEEL 0901: NVRSLVPCND TLKYASLKAE PDFSVLGKRL GKSMGLVAKE VKEMSQKDIL AFEEAGEVTI ANHLLKETDI KIVRVFKRPD DLKENEIDSA GDGDVLVILD 1001: LRADDSLVEA GFAREIVNRI QKLRKKSGLE PTDFVEVYFQ SLDEDESVSK QVLVSQEQNI KDSIGSTLLL SSLMPSHAVI IADETFTPKE TSDESVKKVP 1101: KLSYKISLAR PALKFNEEAV LALYSGDVKS ATGLQTYLLS RDHSNLKSEF QAGDGKITVS CIENVPVATV VLGEHLHLSV GDDLLSKRNA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)