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AT1G50670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : OTU-like cysteine protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); Has 406 Blast hits to 406 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 136; Plants - 63; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1841-MONOMERDNASU:841489eggNOG:COG5539eggNOG:KOG3288
EMBL:AC012561EMBL:AC079279EMBL:BT002977EMBL:BT004408
EMBL:CP002684EMBL:JQ013443EnsemblPlants:AT1G50670EnsemblPlants:AT1G50670.1
entrez:841489GeneID:841489GO:GO:0005829GO:GO:0008233
Gramene:AT1G50670.1hmmpanther:PTHR13312HOGENOM:HOG000193461InterPro:IPR003323
KEGG:ath:AT1G50670KO:K13719merops:C85.007OMA:CAWILNP
Pfam:PF02338Pfscan:PS50802PhylomeDB:Q9LPT6PIR:D96543
PROSITE:PS50802Proteomes:UP000006548RefSeq:NP_175482.1SMR:Q9LPT6
STRING:3702.AT1G50670.1SUPFAM:SSF54001TAIR:AT1G50670UniGene:At.37985
UniGene:At.70451UniProt:Q9LPT6
Coordinates (TAIR10) chr1:-:18775086..18776552
Molecular Weight (calculated) 23426.70 Da
IEP (calculated) 4.73
GRAVY (calculated) -0.35
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGIIVRRVI PSDNSCLFNA IGYVMDKDKN KAPELRQVIA AAVASNKEKY NEAFLGKLNE EYCAWILNPD KWGGAIELSI LADYYGREIA AYDIQTSRCD
101: LYGQTRNYDE RVMLIYDGLH YDALALSPFE GAEEDFDMTI YPVGKDRSIG SIEGLALNLV KDQQRKRSYT DTANFTLRCG VCQIGVIGQK EAVEHAQATG
201: HVNFQEYK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)