AT1G50670.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.994 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : OTU-like cysteine protease family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); Has 406 Blast hits to 406 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 136; Plants - 63; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:18775086..18776552 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 23426.70 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.73 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||
Length | 208 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEGIIVRRVI PSDNSCLFNA IGYVMDKDKN KAPELRQVIA AAVASNKEKY NEAFLGKLNE EYCAWILNPD KWGGAIELSI LADYYGREIA AYDIQTSRCD 101: LYGQTRNYDE RVMLIYDGLH YDALALSPFE GAEEDFDMTI YPVGKDRSIG SIEGLALNLV KDQQRKRSYT DTANFTLRCG VCQIGVIGQK EAVEHAQATG 201: HVNFQEYK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)