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AT4G09720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog G3A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog G3A (RABG3A); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3B (TAIR:AT1G22740.1); Has 25661 Blast hits to 25639 proteins in 719 species: Archae - 36; Bacteria - 127; Metazoa - 13221; Fungi - 3843; Plants - 2827; Viruses - 20; Other Eukaryotes - 5587 (source: NCBI BLink).
Protein Annotations
EMBL:AB071851EMBL:AK229171EMBL:AL049482EMBL:AL161515
EMBL:BT029504EMBL:BT030039EMBL:CP002687EnsemblPlants:AT4G09720
EnsemblPlants:AT4G09720.1entrez:826558ExpressionAtlas:Q948K8Gene3D:3.40.50.300
GeneID:826558Genevisible:Q948K8GO:GO:0005525GO:GO:0005622
GO:GO:0005886GO:GO:0007264GO:GO:0015031hmmpanther:PTHR24073
hmmpanther:PTHR24073:SF586HOGENOM:HOG000233968InParanoid:Q948K8InterPro:IPR001806
InterPro:IPR005225InterPro:IPR027417iPTMnet:Q948K8Pfam:PF00071
Pfam:Q948K8Pfscan:PS51419PhylomeDB:Q948K8PIR:T04019
PRIDE:Q948K8PRO:PR:Q948K8PROSITE:PS51419ProteinModelPortal:Q948K8
Proteomes:UP000006548RefSeq:NP_192710.1RefSeq:NP_849347.1SMR:Q948K8
SUPFAM:SSF52540TAIR:AT4G09720tair10-symbols:ATRABG3Atair10-symbols:RABG3A
TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.26414UniProt:Q948K8
Coordinates (TAIR10) chr4:+:6133101..6134959
Molecular Weight (calculated) 22751.80 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.27
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MATRRRTLLK VIVLGDSGVG KTSLMNQYVH KKFSMQYKAT IGADFVTKEL QIGEKLVTLQ IWDTAGQERF QSLGAAFYRG ADCCALVYDV NVLRSFDNLE
101: TWHEEFLKQA SPSDPKTFPF IVLGNKIDVD GGSSRVVSDK KAADWCASNG NIPYFETSAK DDFNVDEAFL TIAKTALANE HEQDIYFQGI PDAVTENEPK
201: GGGCAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)