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AT1G52280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.333
plasma membrane 0.333
vacuole 0.333
ASURE: golgi,plasma membrane,vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAB GTPase homolog G3D
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog G3D (RABG3d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3C (TAIR:AT3G16100.1); Has 26220 Blast hits to 26194 proteins in 779 species: Archae - 32; Bacteria - 221; Metazoa - 13502; Fungi - 3923; Plants - 2848; Viruses - 20; Other Eukaryotes - 5674 (source: NCBI BLink).
Protein Annotations
BioGrid:26883eggNOG:ENOG410XNZVeggNOG:KOG0394EMBL:AB071847
EMBL:AC037424EMBL:AY074361EMBL:AY096407EMBL:CP002684
EnsemblPlants:AT1G52280EnsemblPlants:AT1G52280.1entrez:841658Gene3D:3.40.50.300
GeneID:841658Genevisible:Q9C820GO:GO:0005525GO:GO:0005773
GO:GO:0005774GO:GO:0005794GO:GO:0005886GO:GO:0007264
GO:GO:0015031Gramene:AT1G52280.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF502
HOGENOM:HOG000233968InParanoid:Q9C820IntAct:Q9C820InterPro:IPR001806
InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT1G52280KO:K07897
OMA:KLRDDRPPaxDb:Q9C820Pfam:PF00071Pfam:Q9C820
Pfscan:PS51419PhylomeDB:Q9C820PIR:H96562PRIDE:Q9C820
PRO:PR:Q9C820PROSITE:PS51419ProteinModelPortal:Q9C820Proteomes:UP000006548
RefSeq:NP_175638.1SMR:Q9C820STRING:3702.AT1G52280.1SUPFAM:SSF52540
TAIR:AT1G52280tair10-symbols:AtRABG3dtair10-symbols:RABG3dTIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.22905UniProt:Q9C820
Coordinates (TAIR10) chr1:-:19468150..19469449
Molecular Weight (calculated) 23070.20 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.39
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN
101: NWREEFLIQA SPSDPENFPF VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE PEEEPYLPDT IDVAGGQQQR
201: STGCEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)