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AT1G69030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.961
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BSD domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BSD domain-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G26300.1); Has 264 Blast hits to 264 proteins in 50 species: Archae - 4; Bacteria - 7; Metazoa - 53; Fungi - 11; Plants - 174; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHXXeggNOG:ENOG4111TAKEMBL:CP002684EnsemblPlants:AT1G69030
EnsemblPlants:AT1G69030.1entrez:843235GeneID:843235Gramene:AT1G69030.1
hmmpanther:PTHR31923hmmpanther:PTHR31923:SF7InParanoid:F4I0I6InterPro:IPR005607
iPTMnet:F4I0I6KEGG:ath:AT1G69030ncoils:CoilOMA:HVAPYER
PaxDb:F4I0I6Pfam:PF03909Pfscan:PS50858PRIDE:F4I0I6
PROSITE:PS50858ProteinModelPortal:F4I0I6Proteomes:UP000006548RefSeq:NP_177066.3
SMART:SM00751SMR:F4I0I6SUPFAM:SSF140383TAIR:AT1G69030
UniGene:At.27528UniProt:F4I0I6
Coordinates (TAIR10) chr1:-:25947429..25949262
Molecular Weight (calculated) 34769.00 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.71
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDLWKRAKS FAEEAAKKSQ TITLQSSSTT FVNLVTETAK KSKEFALEAS KKADSINVSE FVAETAKKSK EFAAEVSTKA DQLKVVALKQ ADQIQNIKSI
101: ADIIPGGLGG SGSGGGGSEI SESELVSFGI TDDLREFVKG LTSATFQAFP EQDESSEVSD LETSASNVRK DLSEWQERHA TLVLGSVKQI SKLRYELCPR
201: VMKERRFWRI YFTLVSTHVA PYERKYMEEL RNKAESKDEE AKKSPGLGRT ESAEKNRIST ASSEQDLDTF LLGDLEDSDE APDDGDGDDG GSLGDDDFDK
301: IGNSDVEEEK ESNAAKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)