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AT1G11890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18088326 (2008): endoplasmic reticulum
  • PMID:16954136 (2006): endoplasmic reticulum
  • PMID:16223486 (2005): endoplasmic reticulum
  • PMID:15342965 (2004): endoplasmic reticulum
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Synaptobrevin family protein
Curator
Summary (TAIR10)
member of SEC22 Gene Family
Computational
Description (TAIR10)
SECRETION 22 (SEC22); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1); Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 342; Plants - 449; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
Protein Annotations
BioGrid:22977eggNOG:COG5143eggNOG:KOG0862EMBL:AC002131
EMBL:AY045795EMBL:AY079413EMBL:AY086749EMBL:CP002684
EnsemblPlants:AT1G11890EnsemblPlants:AT1G11890.1entrez:837737Gene3D:1.10.3840.10
Gene3D:3.30.450.50GeneID:837737Genevisible:Q94AU2GO:GO:0000139
GO:GO:0000149GO:GO:0005484GO:GO:0005783GO:GO:0005789
GO:GO:0005794GO:GO:0005886GO:GO:0006906GO:GO:0015031
GO:GO:0016021Gramene:AT1G11890.1hmmpanther:PTHR21136hmmpanther:PTHR21136:SF89
HOGENOM:HOG000044957InParanoid:Q94AU2InterPro:IPR001388InterPro:IPR010908
InterPro:IPR011012KEGG:ath:AT1G11890KO:K08517OMA:VLYFWVL
PaxDb:Q94AU2Pfam:PF00957Pfam:PF13774Pfam:Q94AU2
Pfscan:PS50859Pfscan:PS50892PhylomeDB:Q94AU2PIR:C86253
PRIDE:Q94AU2PRO:PR:Q94AU2PROSITE:PS50859PROSITE:PS50892
ProteinModelPortal:Q94AU2Proteomes:UP000006548Reactome:R-ATH-204005Reactome:R-ATH-5694530
RefSeq:NP_172653.1SMART:SM01270SMR:Q94AU2STRING:3702.AT1G11890.1
SUPFAM:SSF58038SUPFAM:SSF64356TAIR:AT1G11890tair10-symbols:ATSEC22
tair10-symbols:SEC22TMHMM:TMhelixUniGene:At.10645UniProt:Q94AU2
Coordinates (TAIR10) chr1:+:4011509..4012835
Molecular Weight (calculated) 25333.60 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.40
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKMTLIARV TDGLPLAEGL DDGRDLPDSD MYKQQVKALF KNLSRGQNDA SRMSVETGPY VFHYIIEGRV CYLTMCDRSY PKKLAFQYLE DLKNEFERVN
101: GPNIETAARP YAFIKFDTFI QKTKKLYQDT RTQRNIAKLN DELYEVHQIM TRNVQEVLGV GEKLDQVSEM SSRLTSESRI YADKAKDLNR QALIRKWAPV
201: AIVFGVVFLL FWVKNKLW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)