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AT1G57620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : emp24/gp25L/p24 family/GOLD family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G09580.1); Has 1845 Blast hits to 1843 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 849; Fungi - 519; Plants - 275; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
Protein Annotations
BioGrid:27363eggNOG:ENOG410XTBQeggNOG:KOG1691EMBL:AC079733
EMBL:AK117498EMBL:AY085744EMBL:BT005172EMBL:CP002684
EnsemblPlants:AT1G57620EnsemblPlants:AT1G57620.1entrez:842138GeneID:842138
Genevisible:Q9FVU0GO:GO:0000139GO:GO:0005789GO:GO:0006886
GO:GO:0016021GO:GO:0016192Gramene:AT1G57620.1hmmpanther:PTHR22811
hmmpanther:PTHR22811:SF68HOGENOM:HOG000160227InParanoid:Q9FVU0IntAct:Q9FVU0
InterPro:IPR009038InterPro:IPR015720KEGG:ath:AT1G57620ncoils:Coil
OMA:QKEDIPHPANTHER:PTHR22811PaxDb:Q9FVU0Pfam:PF01105
Pfam:Q9FVU0Pfscan:PS50866PhylomeDB:Q9FVU0PIR:D96610
PRIDE:Q9FVU0PRO:PR:Q9FVU0PROSITE:PS50866Proteomes:UP000006548
Reactome:R-ATH-6807878RefSeq:NP_176075.1SMART:SM01190STRING:3702.AT1G57620.1
TAIR:AT1G57620TMHMM:TMhelixUniGene:At.36998UniProt:Q9FVU0
Coordinates (TAIR10) chr1:+:21342863..21344581
Molecular Weight (calculated) 23889.90 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.01
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKKMIPTTI LLSALIFSLS PICEAVWLTV PHTGSKCVSE EIQSNVIVLA DYLVISEEHS IFPTVSVKVT APYGTVLHHR ENTTNGQFAF TTQESGTYLA
101: CFEADAKSHG NKDFSINIDW KTGIAAKDWD SIARKEKIEG VELEFKKLEG AVEAIHENLI YLRNREAEMR IVSEKTNSRV AWYSIMSLGI CIVVSGLQIL
201: YLKQYFEKKK LI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)