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AT5G55200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Co-chaperone GrpE family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Co-chaperone GrpE family protein; FUNCTIONS IN: copper ion binding, ATP binding; INVOLVED IN: protein folding, protein import into mitochondrial matrix; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, head (InterPro:IPR009012), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805); BEST Arabidopsis thaliana protein match is: Co-chaperone GrpE family protein (TAIR:AT4G26780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0576eggNOG:KOG3003EMBL:AB010071EMBL:AY042852
EMBL:AY081551EMBL:CP002688EnsemblPlants:AT5G55200EnsemblPlants:AT5G55200.1
entrez:835613Gene3D:2.30.22.10Gene3D:3.90.20.20GeneID:835613
GO:GO:0000774GO:GO:0005507GO:GO:0005524GO:GO:0005739
GO:GO:0005759GO:GO:0006457GO:GO:0009411Gramene:AT5G55200.1
HAMAP:MF_01151hmmpanther:PTHR21237hmmpanther:PTHR21237:SF23IntAct:Q9FLP3
InterPro:IPR000740InterPro:IPR009012InterPro:IPR013805KEGG:ath:AT5G55200
KO:K03687ncoils:CoilOMA:EVGVTCAPANTHER:PTHR21237
Pfam:PF01025PhylomeDB:Q9FLP3PRINTS:PR00773PROSITE:PS01071
Proteomes:UP000006548RefSeq:NP_200331.1scanprosite:PS01071SMR:Q9FLP3
STRING:3702.AT5G55200.1SUPFAM:0036470SUPFAM:0053405SUPFAM:SSF51064
TAIR:AT5G55200UniGene:At.29457UniGene:At.7437UniProt:Q9FLP3
Coordinates (TAIR10) chr5:+:22394705..22396335
Molecular Weight (calculated) 33204.30 Da
IEP (calculated) 7.08
GRAVY (calculated) -0.44
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVSRVLSRV SRSAGLRSSF SSVVTPKRNQ IPIVASRFHS LVHGTPNKLV AVPVSLRNHG TLDLNVLQRF GFFSSSSAEP KGNESNTEVP KTGETSENVE
101: VGKATDAEID FDDLSRDDLV KLVSEKEDLL KVQQKDIMEM KDKFLRTYAE QQNLMDRTNR NAESAKKFAV QNFATSLLDV ADNLERASSV VKESFSKIDT
201: SKDLAGATPL LKNLLEGVEM TEKQLAEVFR KAGLVKEDPL NEPFNPNRHN AVFQVPDASK PKGTIAHVLK SGYSLYDRVI RPAEVGVTCA VENQEGGKES
301: AA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)