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AT5G56090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome c oxidase 15
Curator
Summary (TAIR10)
Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor.
Computational
Description (TAIR10)
cytochrome c oxidase 15 (COX15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome oxidase assembly (InterPro:IPR003780); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1612eggNOG:KOG2725EMBL:AB011476EMBL:AK117496
EMBL:BT004976EMBL:CP002688EnsemblPlants:AT5G56090EnsemblPlants:AT5G56090.1
entrez:835708GeneID:835708Genevisible:Q9FKT8GO:GO:0005739
GO:GO:0005743GO:GO:0006784GO:GO:0008535GO:GO:0016021
GO:GO:0016627GO:GO:0016653GO:GO:1902600Gramene:AT5G56090.1
HAMAP:MF_01665hmmpanther:PTHR23289hmmpanther:PTHR23289:SF2HOGENOM:HOG000214943
InParanoid:Q9FKT8InterPro:IPR003780InterPro:IPR023754KEGG:ath:AT5G56090
KO:K02259OMA:TALIYIVPaxDb:Q9FKT8Pfam:PF02628
Pfam:Q9FKT8PhylomeDB:Q9FKT8PRIDE:Q9FKT8PRO:PR:Q9FKT8
Proteomes:UP000006548Reactome:R-ATH-189451RefSeq:NP_200420.1STRING:3702.AT5G56090.1
TAIR:AT5G56090tair10-symbols:COX15TMHMM:TMhelixUniGene:At.24620
UniProt:Q9FKT8
Coordinates (TAIR10) chr5:+:22714634..22716605
Molecular Weight (calculated) 50130.20 Da
IEP (calculated) 10.71
GRAVY (calculated) 0.16
Length 457 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRAVGSALK RNKEAFNGIA RGFTTSSHRV FTSNITAASV TSASSSPLAG NSFYGLRSLL KGQNASMFRR MSTVASISSE SKEGLKLLVT GGPQAQKWVG
101: IWLFGSAAWV FSMVVLGGVT RLTRSGLSMT DWKFTGEFPP LSDEAWAKEF EKYKQSPEYK RVNKGMNLED FKFIYWMEYA HRMWGRGLGI MFALPFSYFL
201: RKGYITLRLG VQLSGLFALG AGQGFIGWWM VKSGLEEPPS EYSQPRVSPY RLAAHLTSAF AIYCGLFWTA LSVVMPEPPA ESLAWVRGAA KVKKLALPVS
301: LIVGITAISG AFVAGNDAGR AFNTFPKMGD TWIPDNIFEM KPLLRNFFEN TATVQLDHRL LATTTLIAIG TMWWFTRKLD IHPAVKALIG STVGMTAVQV
401: TLGVSTLLSY VPVSLGSAHQ AGALTLLTLM LLLNHTLRRP SPSLLKSLPQ VAKSNFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)