AT5G56090.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cytochrome c oxidase 15 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
cytochrome c oxidase 15 (COX15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome oxidase assembly (InterPro:IPR003780); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:22714634..22716605 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 50130.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.71 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 457 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MFRAVGSALK RNKEAFNGIA RGFTTSSHRV FTSNITAASV TSASSSPLAG NSFYGLRSLL KGQNASMFRR MSTVASISSE SKEGLKLLVT GGPQAQKWVG 101: IWLFGSAAWV FSMVVLGGVT RLTRSGLSMT DWKFTGEFPP LSDEAWAKEF EKYKQSPEYK RVNKGMNLED FKFIYWMEYA HRMWGRGLGI MFALPFSYFL 201: RKGYITLRLG VQLSGLFALG AGQGFIGWWM VKSGLEEPPS EYSQPRVSPY RLAAHLTSAF AIYCGLFWTA LSVVMPEPPA ESLAWVRGAA KVKKLALPVS 301: LIVGITAISG AFVAGNDAGR AFNTFPKMGD TWIPDNIFEM KPLLRNFFEN TATVQLDHRL LATTTLIAIG TMWWFTRKLD IHPAVKALIG STVGMTAVQV 401: TLGVSTLLSY VPVSLGSAHQ AGALTLLTLM LLLNHTLRRP SPSLLKSLPQ VAKSNFS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)