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AT3G02230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.758
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:18998720 (2009): extracellular region
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15734919 (2005): cytosol
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : reversibly glycosylated polypeptide 1
Curator
Summary (TAIR10)
reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis
Computational
Description (TAIR10)
reversibly glycosylated polypeptide 1 (RGP1); FUNCTIONS IN: cellulose synthase (UDP-forming) activity; INVOLVED IN: response to salt stress, plant-type cell wall biogenesis; LOCATED IN: cytosolic ribosome, Golgi stack, cell wall, plasma membrane, Golgi trans cisterna; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: reversibly glycosylated polypeptide 2 (TAIR:AT5G15650.1); Has 260 Blast hits to 255 proteins in 45 species: Archae - 24; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHTPeggNOG:ENOG411144TEMBL:KJ138846EnsemblPlants:AT3G02230
EnsemblPlants:AT3G02230.1entrez:821233ExpressionAtlas:W8PVH6GeneID:821233
GO:GO:0005774GO:GO:0016740GO:GO:0016866GO:GO:0030244
Gramene:AT3G02230.1hmmpanther:PTHR31682hmmpanther:PTHR31682:SF3InterPro:IPR004901
InterPro:IPR029044KEGG:ath:AT3G02230KO:K13379OMA:IYWQEEI
PaxDb:W8PVH6Pfam:PF03214Pfam:Q9SRT9PhylomeDB:W8PVH6
PIRSF:PIRSF016429RefSeq:NP_186872.1STRING:3702.AT3G02230.1SUPFAM:SSF53448
tair10-symbols:ATRGP1tair10-symbols:RGP1UniGene:At.24058UniProt:Q9SRT9
UniProt:W8PVH6
Coordinates (TAIR10) chr3:+:415463..417304
Molecular Weight (calculated) 40631.20 Da
IEP (calculated) 5.70
GRAVY (calculated) -0.15
Length 357 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)