suba logo
AT5G15490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-glucose 6-dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
UDP-glucose 6-dehydrogenase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cytosol, cell wall, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT3G29360.2); Has 13373 Blast hits to 13344 proteins in 2170 species: Archae - 309; Bacteria - 7111; Metazoa - 214; Fungi - 99; Plants - 213; Viruses - 14; Other Eukaryotes - 5413 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G15490-MONOMERBioGrid:16678BRENDA:1.1.1.22EC:1.1.1.22
eggNOG:COG1004eggNOG:KOG2666EMBL:AL391143EMBL:AY056200
EMBL:BT015794EMBL:CP002688EnsemblPlants:AT5G15490EnsemblPlants:AT5G15490.1
entrez:831402Gene3D:3.40.50.720GeneID:831402Genevisible:Q9LF33
GO:GO:0003979GO:GO:0005618GO:GO:0005634GO:GO:0005829
GO:GO:0005975GO:GO:0006024GO:GO:0006065GO:GO:0051287
GO:GO:0052546Gramene:AT5G15490.1gramene_pathway:1.1.1.22gramene_pathway:PWY-3821
gramene_pathway:PWY-4821gramene_plant_reactome:1119563gramene_plant_reactome:6876153hmmpanther:PTHR11374
hmmpanther:PTHR11374:SF28HOGENOM:HOG000153773InParanoid:Q9LF33InterPro:IPR001732
InterPro:IPR008927InterPro:IPR014026InterPro:IPR014027InterPro:IPR016040
InterPro:IPR017476InterPro:IPR028356iPTMnet:Q9LF33KEGG:00040+1.1.1.22
KEGG:00053+1.1.1.22KEGG:00500+1.1.1.22KEGG:00520+1.1.1.22KEGG:ath:AT5G15490
KO:K00012OMA:RQSPIQDPANTHER:PTHR11374PaxDb:Q9LF33
Pfam:PF00984Pfam:PF03720Pfam:PF03721Pfam:Q9LF33
PhylomeDB:Q9LF33PIR:T51527PIRSF:PIRSF000124PIRSF:PIRSF500133
PRIDE:Q9LF33PRO:PR:Q9LF33ProteinModelPortal:Q9LF33Proteomes:UP000006548
Reactome:R-ATH-173599RefSeq:NP_197053.1SMART:SM00984SMR:Q9LF33
STRING:3702.AT5G15490.1SUPFAM:SSF48179SUPFAM:SSF51735SUPFAM:SSF52413
TAIR:AT5G15490TIGRfam:TIGR03026TIGRFAMs:TIGR03026UniGene:At.20910
UniPathway:UPA00038UniProt:Q9LF33
Coordinates (TAIR10) chr5:-:5027872..5029314
Molecular Weight (calculated) 53119.90 Da
IEP (calculated) 5.83
GRAVY (calculated) -0.06
Length 480 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKICCIGAG YVGGPTMAVI ALKCPSVEVA VVDISVPRIN AWNSDQLPIY EPGLDDVVKQ CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA
101: ADLTYWESAA RMIADVSVSD KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIEDLFM PDRVLIGGRE TTEGFAAVKA LKDIYAQWVP
201: EERILTTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT GANVSEVSYA VGKDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI
301: KINDYQKTRF VNRIVSSMFN TVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLGDKARL SIYDPQVTEE QIQRDLTMNK FDWDHPLHLQ PMSPTTVKQV
401: SVAWDAYTAT KDAHGICILT EWDEFKKLDF QRIFENMQKP AFVFDGRNVV DADKLREIGF IVYSIGKPLD QWLKDMPALA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)