AT3G53520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UDP-glucuronic acid decarboxylase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
UDP-glucuronic acid decarboxylase 1 (UXS1); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 47365 Blast hits to 47309 proteins in 3022 species: Archae - 864; Bacteria - 27567; Metazoa - 790; Fungi - 366; Plants - 1585; Viruses - 98; Other Eukaryotes - 16095 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19841635..19844057 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48633.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 435 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKQLHKQMSS KRDEETIPMS QSSPYSPKTL KHPRSLPRSL HYLFREQRLL FILVGILIGS TFFILQPSLS RLGAAESTSL ITRSVSYAVT DSPPSRSTFN 101: SGGGGGRTGR VPVGIGRKRL RIVVTGGAGF VGSHLVDKLI GRGDEVIVID NFFTGRKENL VHLFSNPRFE LIRHDVVEPI LLEVDQIYHL ACPASPVHYK 201: YNPVKTIKTN VMGTLNMLGL AKRVGARFLL TSTSEVYGDP LEHPQKETYW GNVNPIGERS CYDEGKRTAE TLAMDYHRGA GVEVRIARIF NTYGPRMCLD 301: DGRVVSNFVA QTIRKHPMTV YGDGKQTRSF QYVSDLVEGL VALMENDHVG PFNLGNPGEF TMLELAEVVK EVIDPSATIE FKPNTADDPH KRKPDISKAK 401: EQLNWEPKIS LREGLPRMVS DFRNRILNED EGKGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)