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AT1G72730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18433157 (2008): cytosol
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4A1 (TAIR:AT3G13920.1); Has 48726 Blast hits to 48144 proteins in 3104 species: Archae - 749; Bacteria - 26664; Metazoa - 6044; Fungi - 4769; Plants - 2616; Viruses - 17; Other Eukaryotes - 7867 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1202-MONOMERBioGrid:28824EC:3.6.4.13eggNOG:COG0513
eggNOG:KOG0327EMBL:AC010926EMBL:AJ010472EMBL:AY060592
EMBL:AY088176EMBL:AY142066EMBL:CP002684EnsemblPlants:AT1G72730
EnsemblPlants:AT1G72730.1entrez:843605Gene3D:3.40.50.300GeneID:843605
Genevisible:Q9CAI7GO:GO:0003743GO:GO:0004386GO:GO:0005524
GO:GO:0005774GO:GO:0005829GO:GO:0009505Gramene:AT1G72730.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF294HOGENOM:HOG000268797InParanoid:Q9CAI7
IntAct:Q9CAI7InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545
InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417iPTMnet:Q9CAI7
KEGG:ath:AT1G72730KO:K03257MINT:MINT-8063916OMA:TGRAGFK
PaxDb:Q9CAI7Pfam:PF00270Pfam:PF00271Pfam:Q9CAI7
Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q9CAI7
PIR:B96752PIR:T51347PRIDE:Q9CAI7PRO:PR:Q9CAI7
PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195
ProteinModelPortal:Q9CAI7Proteomes:UP000006548RefSeq:NP_177417.1scanprosite:PS00039
SMART:SM00487SMART:SM00490SMR:Q9CAI7STRING:3702.AT1G72730.1
SUPFAM:SSF52540TAIR:AT1G72730UniGene:At.22983UniProt:Q9CAI7
Coordinates (TAIR10) chr1:-:27378040..27379593
Molecular Weight (calculated) 46773.30 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.22
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGMASDGTQ YDPRQFDTKM NAILGEEGEE TFYTNYDEVC DSFDAMELQP DLLRGIYAYG FEKPSAIQQR GIIPFCKGLD VIQQAQSGTG KTATFCSGVL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)