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AT5G56680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Class II aminoacyl-tRNA and biotin synthetases superfamily protein
Curator
Summary (TAIR10)
Encodes a putative cytosolic asparaginyl-tRNA synthetase.
Computational
Description (TAIR10)
SYNC1; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: cotyledon, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT1G70980.1); Has 19343 Blast hits to 13725 proteins in 2674 species: Archae - 682; Bacteria - 14860; Metazoa - 615; Fungi - 765; Plants - 223; Viruses - 0; Other Eukaryotes - 2198 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G56680-MONOMERBioGrid:21013EC:6.1.1.22eggNOG:COG0017
eggNOG:KOG0554EMBL:AB013392EMBL:AF170909EMBL:BT030358
EMBL:CP002688EnsemblPlants:AT5G56680EnsemblPlants:AT5G56680.1entrez:835769
ExpressionAtlas:Q9SW96Gene3D:1.10.287.10Gene3D:2.40.50.140GeneID:835769
Genevisible:Q9SW96GO:GO:0003677GO:GO:0004816GO:GO:0005524
GO:GO:0005739GO:GO:0005829GO:GO:0006421GO:GO:0009507
GO:GO:0009793GO:GO:0046686Gramene:AT5G56680.1gramene_pathway:6.1.1.22
gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00534hmmpanther:PTHR22594hmmpanther:PTHR22594:SF34
HOGENOM:HOG000226033InParanoid:Q9SW96InterPro:IPR000738InterPro:IPR002312
InterPro:IPR004364InterPro:IPR004365InterPro:IPR004522InterPro:IPR006195
InterPro:IPR009068InterPro:IPR012340InterPro:IPR018150iPTMnet:Q9SW96
KEGG:00970+6.1.1.22KEGG:ath:AT5G56680KO:K01893OMA:GEMFQAT
PANTHER:PTHR22594PaxDb:Q9SW96Pfam:PF00152Pfam:PF00458
Pfam:PF01336Pfam:Q9SW96Pfscan:PS50862Pfscan:PS51185
PhylomeDB:Q9SW96PRIDE:Q9SW96PRINTS:PR01042PRO:PR:Q9SW96
PROSITE:PS50862PROSITE:PS51185ProteinModelPortal:Q9SW96Proteomes:UP000006548
RefSeq:NP_200479.1SMART:SM00991SMR:Q9SW96STRING:3702.AT5G56680.1
SUPFAM:SSF50249SUPFAM:SSF55681TAIR:AT5G56680tair10-symbols:EMB2755
tair10-symbols:SYNC1tair10-symbols:SYNC1 ARATHTIGRfam:TIGR00457TIGRFAMs:TIGR00457
UniGene:At.22552UniProt:A4FVR0UniProt:Q9SW96
Coordinates (TAIR10) chr5:+:22936645..22938841
Molecular Weight (calculated) 63786.40 Da
IEP (calculated) 5.24
GRAVY (calculated) -0.19
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)