AT4G20850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tripeptidyl peptidase ii | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
tripeptidyl peptidase ii (TPP2); FUNCTIONS IN: tripeptidyl-peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Peptidase S8A, tripeptidyl peptidase II (InterPro:IPR022229); Has 6394 Blast hits to 6195 proteins in 1270 species: Archae - 226; Bacteria - 4362; Metazoa - 666; Fungi - 272; Plants - 126; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11160935..11169889 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 152376.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.93 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1380 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDLSLQLQIH GALINKGPSC TSYWASSSSL SLPRDFISSS TFLLHRRLRR RSCSRSRGIR LRRSGFSAMP CSSSDTLTAS RVGCGGGGGG GAVGGGAENA 0101: SVANFKLNES TFIASLMPKK EIRADCFIEA HPEYDGRGVV IAIFDSGFDP SAAGLHVTSD GKPKVLDVID CTGSGDIDTS TVVKANEDGH IRGASGATLV 0201: VNSSWKNPTG EWRVGSKLVY QLFTDDLTSR VKKERRKSWD EKNQEEIAKA VNNLYDFDQK HSKVEDAKLK KTREDLQSKV DFLKKQADKY EDKGPVIDAV 0301: VWHDGEVWRV ALDTQSLEED PDSGKLADFS PLTNYRIERK YGVFSRLDAC SFVANVYDEG KVLSIVTDSS PHGTHVAGIA TAHHPEEHLL NGVAPGAQII 0401: SCKIGDSRLG SMETGTGLTR ALIAALEHNC DLVNMSYGEP ALLPDYGRFV DLVTEAVNKR RLIFVSSAGN SGPALTTVGA PGGTTSSIIG VGAYVSPAMA 0501: AGAHSVVEPP SEGLEYTWSS RGPTSDGDLG VCISAPGGAV APVPTWTLQR RMLMNGTSMA SPSACGAIAL LLSAMKAEGI PVSPYSVRRA LENTSTPVGD 0601: LPEDKLTTGQ GLMQVDKAYE YLKQFQDYPC VFYQIKVNLS GKTIPTSRGI YLREGTACRQ STEWTIQVDP KFHEGASNLK ELVPFEECLE LHSTDEGVVR 0701: VPDYLLLTNN GRGFNVVVDP TNLGDGVHYF EVYGIDCKAP ERGPLFRIPV TIIIPKTVAN QPPVISFQQM SFISGHIERR YIEVPHGATW AEATMRTSGF 0801: DTTRRFYIDT LQVCPLRRPI KWESAPTFAS PSAKSFVFPV VSGQTMELAI AQFWSSGLGS REPTIVDFEI EFHGVGVDKE ELLLDGSEAP IKVEAEALLA 0901: SEKLVPIAVL NKIRVPYQPI DAQLKTLSTG RDRLLSGKQI LALTLTYKFK LEDSAEVKPY IPLLNNRIYD TKFESQFFMI SDTNKRVYAM GDVYPESSKL 1001: PKGEYKLQLY LRHENVELLE KLKQLTVFIE RNMGEIRLNL HSEPDGPFTG NGAFKSSVLM PGVKEAFYLG PPTKDKLPKN TPQGSMLVGE ISYGKLSFDE 1101: KEGKNPKDNP VSYPISYVVP PNKPEEDKKA ASAPTCSKSV SERLEQEVRD TKIKFLGNLK QETEEERSEW RKLCTCLKSE YPDYTPLLAK ILEGLLSRSD 1201: AGDKISHHEE IIEAANEVVR SVDVDELARF LLDKTEPEDD EAEKLKKKME VTRDQLADAL YQKGLAMARI ENLKGEKEGE GEEESSQKDK FEENFKELTK 1301: WVDVKSSKYG TLTVLREKRL SRLGTALKVL DDLIQNENET ANKKLYELKL DLLEEIGWSH LVTYEKQWMQ VRFPKSLPLF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)