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AT5G16990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Zinc-binding dehydrogenase family protein
Curator
Summary (TAIR10)
molecular function has not been defined, was shown involved in oxidative stress tolerance.
Computational
Description (TAIR10)
Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alkenal reductase (TAIR:AT5G16970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G16990-MONOMERBioGrid:16838DNASU:831562EC:1.3.1.74
eggNOG:COG2130eggNOG:KOG1196EMBL:AL391141EMBL:AY065253
EMBL:AY091320EMBL:CP002688EMBL:Z49268EnsemblPlants:AT5G16990
EnsemblPlants:AT5G16990.1entrez:831562Gene3D:3.40.50.720Gene3D:3.90.180.10
GeneID:831562Genevisible:Q39173GO:GO:0005829GO:GO:0005886
GO:GO:0006979GO:GO:0008270GO:GO:0032440Gramene:AT5G16990.1
hmmpanther:PTHR11695hmmpanther:PTHR11695:SF504HOGENOM:HOG000294663InParanoid:Q39173
InterPro:IPR002085InterPro:IPR011032InterPro:IPR013149InterPro:IPR016040
InterPro:IPR020843KEGG:ath:AT5G16990MINT:MINT-8062404OMA:YVEREIG
PANTHER:PTHR11695PaxDb:Q39173Pfam:PF00107Pfam:PF16884
Pfam:Q39173PhylomeDB:Q39173PIR:S57612PIR:T51554
PRIDE:Q39173PRO:PR:Q39173ProteinModelPortal:Q39173Proteomes:UP000006548
RefSeq:NP_197201.1SMART:SM00829SMR:Q39173STRING:3702.AT5G16990.1
SUPFAM:SSF50129SUPFAM:SSF51735TAIR:AT5G16990UniGene:At.22439
UniProt:Q39173
Coordinates (TAIR10) chr5:-:5581831..5583849
Molecular Weight (calculated) 37991.00 Da
IEP (calculated) 8.17
GRAVY (calculated) -0.15
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTNKQVIFK DHVSGFPKES DFNFTTTTVE LRVPEGSKSV LVKNLYLSCD PYMRSRMGKP DPSSALAQAY APGKPIYGYG VSRVIESGHP DYKKGDLLWG
101: IVGWEEYSVI TPMAHMHFKI QHTDVPLSYY TGLLGMPGMT AYAGFYEVCS PKKGETVYVS AASGAVGQLV GQFAKMMGCY VVGSAGSKEK VDLLKTKFGF
201: DDAFNYKEES DLSAALKRCF PKGIDMYFEN VGGKMLDAVL LNMNPHGRIA VCGMISQYNL ENQEGVHNLS NIIYKRIRIQ GFVVADFYDK YPKFLELVLP
301: RIKEGKITYV EDVADGLEKA PEALVGLFHG KNVGKQVVVI ARE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)