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AT5G65060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
MADS domain protein - flowering regulator that is closely related to FLC
Computational
Description (TAIR10)
MADS AFFECTING FLOWERING 3 (MAF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: negative regulation of flower development, regulation of transcription, DNA-dependent, vernalization response; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 31 (TAIR:AT5G65050.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB026633EMBL:AY231445
EMBL:CP002688EMBL:EU980617EMBL:EU980619EMBL:EU980621
EMBL:EU980626EnsemblPlants:AT5G65060EnsemblPlants:AT5G65060.1entrez:836630
ExpressionAtlas:Q9LSR7GeneID:836630GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009910GO:GO:0010048
Gramene:AT5G65060.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF221InterPro:IPR002100
InterPro:IPR002487ncoils:CoilOMA:GMARENGPfam:PF00319
Pfam:PF01486Pfscan:PS50066Pfscan:PS51297PhylomeDB:Q9LSR7
PRINTS:PR00404PROSITE:PS50066PROSITE:PS51297Proteomes:UP000006548
RefSeq:NP_201311.1SMART:SM00432SMR:Q9LSR7STRING:3702.AT5G65060.1
SUPFAM:SSF55455TAIR:AT5G65060tair10-symbols:AGL70tair10-symbols:FCL3
tair10-symbols:MAF3UniGene:At.21040UniProt:Q9LSR7
Coordinates (TAIR10) chr5:+:25987527..25991065
Molecular Weight (calculated) 22130.80 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.48
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRRKVEIKR IENKSSRQVT FSKRRKGLIE KARQLSILCE SSIAVVAVSG SGKLYDSASG DNMSKIIDRY EIHHADELKA LDLAEKIRNY LPHKELLEIV
101: QSKLEESNVD NVSVDSLISM EEQLETALSV IRAKKTELMM EDMKSLQERE KLLIEENQIL ASQVGKKTFL VIEGDRGMSR ENGSGNKVPE TLSLLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)