AT4G19090.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.830 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF594) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF594); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF594) (TAIR:AT5G45470.1); Has 1254 Blast hits to 833 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1252; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:10449900..10452757 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86916.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.72 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||
| Length | 751 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASTEQSNQV VCIYVLRPSP KYKESTRHLV TEFFLLVTHA FLPVQVPETE EPIEKSVKPV ALIAKNQGKY LKPDDPPQNK KLVALWAPFL LLHLGGPDTI 101: TAFSLEDNAL WNRHFLGLVF QALAGVYVVV QSLPNVLSVI ILLLFIAGTS KYLERTIALY LASSDKYRNS MLQASNSRFD YTDQTRDLDM DTKLASEMNM 201: KEHRGQPKPL KLLQPHKELT HLEILQYAFF LELRDESKAF FSALQLKDEA FCIIEAELDF IYEGLYTKGS VLHSWVGLVS RFISLGSLLS AFTIYHYRHN 301: KIQEFHKADI VITYTLFLVG IALDVISIHM FMVSDWTTAI LAKLKDDPDE RYSGKDHILN WILFLKRPKW KWQTCREGDQ QEVLNTPFLL RRWTGSITML 401: NFLTYSMKAD TERIHDPRSR ACQLLWKIAV CPFSFIFSII QTWFSNIAKW FCALHWYIIH HVIILPPGQN QVARSIIGIF KAFVEFWFNV PNFFVYLVTS 501: VINFLGINDL FYEIRLLQKN SQILYSLENT TTKSSARRDW ASSHTQIQIA DHDMLLHYIT DVDYEHSLLI WHIATELCYQ EEDSAKENCD KSEYHTNRKI 601: SKIISDYMMY LLIMQPKLMS EVAGIGKIRF RDTLAEADRF FKKMGIIRDS RNVKLASKEI LSADTSIEPR EVKGNHSKSV LFEASSLAKE LQRVEKNFGE 701: DKWKILSKVW LEFLFHAASH CDATTRMELL SKGGEFINFV WLLMAHFGLG G |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)