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AT4G13880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.787
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor like protein 48
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
receptor like protein 48 (RLP48); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 47 (TAIR:AT4G13810.2); Has 81614 Blast hits to 24875 proteins in 996 species: Archae - 37; Bacteria - 6005; Metazoa - 13733; Fungi - 821; Plants - 54574; Viruses - 20; Other Eukaryotes - 6424 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002687EnsemblPlants:AT4G13880
EnsemblPlants:AT4G13880.1entrez:827022Gene3D:3.80.10.10GeneID:827022
GO:GO:0016021Gramene:AT4G13880.1hmmpanther:PTHR27004hmmpanther:PTHR27004:SF37
InParanoid:F4JTU7InterPro:IPR001611InterPro:IPR003591InterPro:IPR013210
InterPro:IPR032675KEGG:ath:AT4G13880ncoils:CoilOMA:LASCNIV
PaxDb:F4JTU7Pfam:PF00560Pfam:PF08263Pfam:PF13516
Pfam:PF13855Pfscan:PS51450PRIDE:F4JTU7PROSITE:PS51450
ProteinModelPortal:F4JTU7Proteomes:UP000006548RefSeq:NP_193124.2SMART:SM00369
SMR:F4JTU7STRING:3702.AT4G13880.1SUPFAM:SSF52047SUPFAM:SSF52058
TAIR:AT4G13880tair10-symbols:AtRLP48tair10-symbols:RLP48TMHMM:TMhelix
UniGene:At.33327UniProt:F4JTU7
Coordinates (TAIR10) chr4:+:8026151..8028614
Molecular Weight (calculated) 80977.50 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.04
Length 725 amino acids
Sequence (TAIR10)
(BLAST)
001: MHSCSERRMM TVIWSLCLIF CLSNSILAIA KDLCLPDQRD ALLEFKNEFY VQEFDPHMKC EKATETWRNK TDCCSWNRVS CDPKTGKVVE LDLMSSCLNG
101: PLRSNSSLFR LQHLQSLELS SNNISGILPD SIGNLKYLRS LSFRTCHLFG KIPSSLGSLS YLTHLDLSYN DFTSEGPDSG GNLNRLTDLQ LVLLNLSSVT
201: WIDLGSNQLK GRGIVDFSIF LHLKSLCSLD LSYLNTRSMV DLSFFSHLMS LDELDLSGIN LKISSTLSFP SATGTLILAS CNIVEFPKFL ENQTSLFYLD
301: ISANHIEGQV PEWLWRLPTL SFVNIAQNSF SGELPMLPNS IYSFIASDNQ FSGEIPRTVC ELVSLNTLVL SNNKFSGSIP RCFENFKTIS ILHLRNNSLS
401: GVFPKEIISE TLTSLDVGHN WLSGQLPKSL IKCTDLEFLN VEDNRINDKF PFWLRSLSNL QILVLRSNEF YGPIFSLEDS LSFPKLRIFD ISENHFTGVL
501: PSDYFAGWSA MSSVVDIFDT TPQVHILGVF QGYYHNSVVL TNKGLNMELV GSGFTIYKTI DVSGNRLEGD IPESIGILKE LIVLNMSNNA FTGHIPPSLS
601: NLSNLQSLDL SQNRLSGSIP PELGKLTFLE WMNFSYNRLE GPIPQATQIQ SQNSSSFAEN PGLCGAPFLN KCGGEEEEEE EATKQEEDED EEKEEKNQVF
701: SWIAAAIGYV PGVFCGLTIA HILTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)