AT1G26580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9185620..9187213 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55796.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.55 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||
| Length | 493 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFKRPFEDE KFHELPLKHS RQLDYNDKST QFEEVSPHHA GFQKTVATVN EGNLCKSQGG ESSEGDMFDE ESNYVYPGHD MDDTFTWDTQ GCGGRDATYS 101: PHSGKYFELD IPPRVFAPVE TFYYLLLDQR AKKQVPIGPG HQAEIPEWEG SQTGNIETSG MSVQNHISGC ADGEKLFGTS VIPMPGLTTV AHIDDIVGKG 201: RKFCVCRDRD SVRCVCQHIK EAREELVKTF GNETFKELGL CEMGEKGALK WSDEDAQLFH EVVYSNPVTL GQNFWRHLEA AFCSRTQKEI VSFYFNVFVL 301: RRRAIQNRAF ILDIDSDDDE WHGCYGGSSG TRYVEEDEED SAIESPLHQG TKKVYPLHHE EGEEDVSHSS NDEDDDDTKE GGTGLYDEHK MSSTVEYMDR 401: FSGNNGERLN VEDDSCTSFE LARNAVNCAE KDETVPGEQQ KKLKDCNDPI DTKVWDASRC LNVPTNGKDL QPTRRIMEEI FGNGCWENKA RNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)