AT2G42330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT1G17070.1); Has 1086 Blast hits to 1065 proteins in 234 species: Archae - 0; Bacteria - 5; Metazoa - 675; Fungi - 134; Plants - 155; Viruses - 1; Other Eukaryotes - 116 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17631831..17634089 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86530.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 752 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDEGKKEKR RQTKEDAVYG FVFESDSNSD DSGGSRRKKR RKTKPVKFSS AGNIDQVLKQ NRGNCKIDEN DDTILPIALG KKIADKAHVR EKNNKKENFE 101: KFSGGIGMKL LEKMGYKGRG LGKNQQGIVA PIEVQLRPKN MGMGYNDFKE KNAPLFPCLN KVEEKKKSVV VTVSENHGDG RRDLWKKKNV RKEVYITAEE 201: FLGKKQEEGF GCDQLIIDKR GPQDRVVNSL RNLYAEEKAT DANVQQPELQ HNLRFIVKSL EHGILKTDKD LRNEKGLALS LQQEKEKFKM GVKKQKTLFD 301: NLGYVAEEID RIEVEIASGN LTLDSLANRF KDLRSSYPDD YKCCNLSCIA SSLALPLFIR MFQGWDPLSD AEHGIEAISS WKMLLEVEDN QSISTPYSQL 401: VSEVILPAVR VSGINTWEPR DPEPMLRLLE TWEKMLPSLI FETILTTVVL PKLSIAIESW EPRLETVPIH FWVHPWLPVL GQKLESAYQI IRMKFGNLLD 501: AWHPSDVSVH TILSPWKTVF DAASWEQLMR RYIVPKLQVA LQEFQINPAD QNLDEFNLVM GWVSSVPIHL MTDLMERFFF PKWLDVLYHW LCSEPKFDEI 601: MKWFLGWKGT FPQELSANRR IEIQFKRGLD MAREAVERME MSQPGARENI SYHKAQEQRQ SEGRAKVQAQ VDDPEELSFK EAVELFAQEK ELLLKPKPHR 701: MHNGLQIYRF GNVSVLLDSA NSKLLAQEEG RWFPVDLDSL LKMHYSAVTG KQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)