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AT4G32440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant Tudor-like RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant Tudor-like RNA-binding protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Plant Tudor-like protein (TAIR:AT2G25590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YF3TeggNOG:KOG4675EMBL:AK227356EMBL:AL034567
EMBL:AL161581EMBL:BT003086EMBL:CP002687EnsemblPlants:AT4G32440
EnsemblPlants:AT4G32440.1entrez:829379ExpressionAtlas:Q9SUU8GeneID:829379
Gramene:AT4G32440.1hmmpanther:PTHR31917hmmpanther:PTHR31917:SF5HOGENOM:HOG000238892
IntAct:Q9SUU8InterPro:IPR005491InterPro:IPR008395InterPro:IPR014002
Pfam:PF03735Pfam:PF05641Pfscan:PS51138PhylomeDB:Q9SUU8
PIR:T05354PROSITE:PS51138Proteomes:UP000006548RefSeq:NP_194970.1
SMART:SM00743SMART:SM01191STRING:3702.AT4G32440.2SUPFAM:0053920
SUPFAM:SSF158639TAIR:AT4G32440UniGene:At.31662UniProt:Q9SUU8
Coordinates (TAIR10) chr4:+:15657295..15658692
Molecular Weight (calculated) 42226.40 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.66
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MRIRKGSRVE VFSNKEAPYG AWRCAEIVSG NGHTYNVRFY SFQIEHEEAV MEKVPRKIIR PCPPLVDVER WDTGELVEVL DNFSWKAATV REELSGHYYV
101: VRLLGTPEEL TFHKVNLRAR KSWQDERWVA IGKISGSLKS STLTGSDVHQ KLQPHRNSMP LHEPSVVSAR LLKRPSPYNW SECAESCTGN PKKMRSLEKE
201: GQQQKVDAIS CRPENRGGKS HVQASLNNHK TGYCQIVRVR SKGFSESVRA DDCSDSDVCS VGSCSATSYD ESNMPPCMLD GSTQQADSCS SDAESSCGLG
301: EEPRWKHSSV GDGARNSCRS ELYSYRSTLG ELFSSGPLSW EQEASLTDLR LSLNISDDEH LMEVRNLIST GTRSQFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)