AT2G39580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16510540..16516948 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 175863.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||
| Length | 1577 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTTPITGKNS PVTGKEEGEL STSDDEVQPM QTSTRSPLTE HISANTNIQR RQAGNGGSFI KPSDATPTKL TNPGGRIFET KQAIAAIHGK KFPVRGNNSN 0101: LVINFSDDDS GSESDCKGRT QTSKIQPKGT ISGNRNPSTF SQTKLKGPRQ IDIRAITKKA LSTSTFSHAA TSKVSNLSFA KEMKSNKYIH SSERTVSKDA 0201: QRPEQIVESN SNKLQDLKQQ IALRESELKL KAAQPKKDAV NPKITPARRV SIISDDTRHL EPNEPPKKRL KVSGIDTSQP VIDYRVAASA AAPMNAPDIR 0301: KSLLPGVNAN SSCKHLGSKS DEIVPPVIPQ HTVEGNTSSS VLQKSTGKVN HYEGGRELET MKNVDRSVSS EQLLKIVNGN HQVFSRSSNN NWKRLPCSNN 0401: SGLYNIPGST TVPGHSQLDM LSLTNLEESL DKELEEAQER KRLFEIEERN ALKVYRKAQR SLIEANARCA ELYSKREILS AHYGSLIVRD SRLLWPSIHG 0501: ENPETGFHFL NNSTGSIDLA TKTDIAQHSQ LESNHKYNSE YVGSHPPPHS RSGQNLGYSD LGASTSDGLP CGNKQTASRL CSPSSDANIL PDDESFPVDH 0601: ESTEGNPGHQ KENIDQTLGN QNALLLEASL RSKLFDRLGM RAESRGGTCF NEETVIDRGD ERDFGSEGTQ RDNGSPFSEI YLHNDSLEPG ANKLQGSPSE 0701: APVERRSIEE NSLNYQLSID MESHRSSPEN ALLSSVALSG PLFRSTIYHL KVPGSSITSL GPEYILQNKT YSLYSDKRQC RSLTETIVYE KKIGFYTCNL 0801: KVDPSWPLCM YELRGRCNND ECSWQHFKDF SDDSLHQSLH DPDGRVGSSS HQKTHNSSKG SQILDSVFSP TYLVSLDTMK VDSWSYESVL AQRHGQIWCK 0901: HFSACLASSN SLYRNVPAKE NEGRIVVLGN SKTYSSYFRI KHSLMWHIFQ ALSLLSQGLE GDPTSEILWA VYLLIYHAYE GSDGKDMFSY GVKHSSRSYV 1001: IWLMYINSRG QLNDQLIAYD TALSALCNHA SGSIDRNHAS ACILDVLLQM FNLLCISGNV SKAIQRISKL QAPAAVSDDP DFSLMSHILT CLTYSDKCVF 1101: WVCCVYLVIY RKLPDSIIRR LEMEKELLEI EWPTVNLDGD LKQMALRLFD KGMRSVEHGT NNGIQKRPAG LFALNYALFM IAVDELESRR DILKASVQLY 1201: PTCLELKLLA VRMQSNELKD MFSSGFEELL KQEAKEASCI QCIWNQYAEY ALEGGSYDLA RELMSRWYGS VWDVLSHKYK TVRGNEEEGD DNMLESALSD 1301: LNVASDQVDV MFGYLNLSLH NLLQSNWTEA RLAIDQALKA TAPEHFMHCL REHAVFQLIN ELQATGEFSI NLQMRLLNSY LDRASSLPVK EPLSWKFISN 1401: SAEKPRVRKL VTNLLAPVSS ELFVVNVVLE AWHGPSLVPE KLSKQKELVD FVETILGLVP SNYPLALSVS KLLRKEEKQS DSGSSSGIHF WAGLNLASTI 1501: SCAIPVAPEY IWVEAGEIVS DINGFKTRAE RFLKKALSVY PMSVKLWRCY WSLCKSIEER RGIEIEEAAR KKGITLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)