AT2G42270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : U5 small nuclear ribonucleoprotein helicase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20124 Blast hits to 12378 proteins in 1898 species: Archae - 1780; Bacteria - 8009; Metazoa - 2781; Fungi - 2333; Plants - 1088; Viruses - 52; Other Eukaryotes - 4081 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17604330..17610848 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 247403.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2172 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTNLGGGGAE EQARLKQYGY KVNSSLVLNS DERRRDTHES SGEPESLRGR IDPKSFGDRV VRGRPHELDE RLNKSKKKKE RCDDLVSARE SKRVRLREVS 0101: VLNDTEDGVY QPKTKETRVA FEIMLGLIQQ QLGGQPLDIV CGAADEILAV LKNESVKNHE KKVEIEKLLN VITDQVFSQF VSIGKLITDY EEGGDSLSGK 0201: ASEDGGLDYD IGVALECEED DDESDLDMVQ DEKDEEDEDV VELNKTGVVQ VGVAINGEDA RQAKEDTSLN VLDIDAYWLQ RKISQEYEQK IDAQECQELA 0301: EELLKILAEG NDRDVEIKLL EHLQFEKFSL VKFLLQNRLK VVWCTRLARG RDQEERNQIE EEMLGLGSEL AAIVKELHAK RATAKEREEK REKDIKEEAQ 0401: HLMDDDSGVD GDRGMRDVDD LDLENGWLKG QRQVMDLESL AFNQGGFTRE NNKCELPDRS FRIRGKEFDE VHVPWVSKKF DSNEKLVKIS DLPEWAQPAF 0501: RGMQQLNRVQ SKVYGTALFK ADNILLCAPT GAGKTNVAVL TILHQLGLNM NPGGTFNHGN YKIVYVAPMK ALVAEVVDSL SQRLKDFGVT VKELSGDQSL 0601: TGQEIKETQI IVTTPEKWDI ITRKSGDRTY TQLVRLLIID EIHLLDDNRG PVLESIVART LRQIESTKEH IRLVGLSATL PNCDDVASFL RVDLKNGLFI 0701: FDRSYRPVPL GQQYIGINVK KPLRRFQLMN DICYQKVVAV AGKHQVLIFV HSRKETAKTA RAIRDTAMAN DTLSRFLKED SQSREILKCL AGLLKNNDLK 0801: ELLPYGFAIH HAGLTRTDRE IVENQFRWGN LQVLISTATL AWGVNLPAHT VIIKGTQVYN PERGEWMELS PLDVMQMIGR AGRPQYDQQG EGIIITGYSK 0901: LQYYLRLMNE QLPIESQFIS KLADQLNAEI VLGTIQNARE ACHWLGYTYL YVRMVRNPTL YGVSPDALAK DLLLEERRAD LIHSAATILD KNNLIKYDRK 1001: SGHFQVTDLG RIASYYYISH GTIAAYNENL KPTMNDIELC RLFSLSEEFK YVTVRQDEKM ELAKLLDRVP IPVKETLEDP SAKINVLLQV YISKLKLEGL 1101: SLTSDMVYIT QSAGRLLRAI FEIVLKRGWA QLSQKALNLS KMVGKRMWSV QTPLWQFPGI PKEILMKLEK NDLVWERYYD LSSQELGELI CNPKMGRPLH 1201: KYIHQFPKLK LAAHVQPISR SVLQVELTVT PDFHWDDKAN KYVEPFWIIV EDNDGEKILH HEYFLFKKRV IDEDHTLNFT VPISEPIPPQ YFIRVVSDKW 1301: LDSPTVLPVS FRHLILPEKY PPPTELLDLQ PLPVMALRNP SYETLYQDFK HFNPVQTQVF TVLYNTSDNV VVAAPTGSGK TICAEFAILR NHLEGPDSAM 1401: RVVYIAPLEA IAKEQFRDWE KKFGKGLGLR VVELTGETLL DLKLLEKGQI IISTPEKWDA LSRRWKQRKY IQQVSLFIVD ELHLIGGQGG QVLEVIVSRM 1501: RYISSQVGNK IRIVALSTSL ANAKDLGEWI GASSCGVFNF PPNVRPVPLE IHIHGVDILS FEARMQAMTK PTYTAIVQHA KNKKPAIVFV PTRKHVRLTA 1601: VDLIAYSHMD NMKSPDFLLG NLEELEPFLI QICEETLKET LRHGIGYLHE GLSNLDQEIV TQLFEAGRIQ VCVMSSSLCW GTPLKAHLVV VMGTHFYDGR 1701: ENSHSDYPIS NLLQMMGRGS RPLLDDAGKC VIFCHAPRKE YYKKFLYEAL PVESHLQHFL HDNFNAEVVA RVIENKQDAV DYLTWSFMYR RLPQNPNYYN 1801: LLGVSHRHLS DHLSELVENT LSDLEVSKCI EIDNELDLSP LNLGMIASYY YINYTTIERF SSLLASKTKM KGLLEILTSA SEYDLIPIRP GEEDAVRRLI 1901: NHQRFSFQNP RCTDPRVKTS ALLQAHFSRQ KISGNLVMDQ CEVLLSATRL LQAMVDVISS NGCLNLALLA MEVSQMVTQG MWDRDSMLLQ LPHFTKDLAK 2001: RCHENPGNNI ETIFDLVEME DDKRQELLQM SDAQLLDIAR FCNRFPNIDL TYEIVGSNEV SPGKDITLQV LLERDMEGRT EVGPVDAPRY PKTKEEGWWL 2101: VVGEAKTNQL MAIKRISLQR KAQVKLEFAV PTETGEKSYT LYFMCDSYLG CDQEYSFTVD VKDSDAADHM EE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)