AT3G04160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 1711 Blast hits to 1353 proteins in 195 species: Archae - 0; Bacteria - 64; Metazoa - 693; Fungi - 201; Plants - 207; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1091647..1094296 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81971.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.71 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||||||
| Length | 712 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRPPSLPHY QNPNPNLFYH YPPPNSNPNF FFRPPPPPLQ NPNNYSIVPS PPPIRELSGT LSSLKSLLSE CQRTLDSLSQ NLALDHSSLL QKDENGCFVR 101: CPFDSNHFMP PEALFLHSLR CPNTLDLIHL LESFSSYRNT LELPCELQLN NGDGDLCISL DDLADFGSNF FYRDCPGAVK FSELDGKKRT LTLPHVLSVE 201: CSDFVGSDEK VKKIVLDKCL GVLPSDLCAM KNEIDQWRDF PSSYSSSVLS SIVGSKVVEI SALRKWILVN STRYGVIIDT FMRDHIFLLF RLCLKSAVKE 301: ACGFRMESDA TDVGEQKIMS CKSSTFECPV FIQVLSWLAS QLAVLYGEGN GKFFALDMFK QCIVESASQV MLFRLEGTRS KCSGVVEDLD DARLRNKDVI 401: MEKPFENSSG GECGKTLDSP QVISVSRVSA AVAALYERSL LEEKIRAVRY AQPLTRYQRA AELGFMTAKA DEERNRRCSY RPIIDHDGRP RQRSLNQDMD 501: KMKTREELLA EERDYKRRRM SYRGKKVKRT PRQVLHDMIE EYTEEIKLAG GIGCFEKGMP LQSRSPIGND QKESDFGYSI PSTDKQWKGE NRADIEYPID 601: NRQNSDKVKR HDEYDSGSSQ RQQSHRSYKH SDRRDDKLRD RRKDKHNDRR DDEFTRTKRH SIEGESYQNY RSSREKSSSD YKTKRDDPYD RRSQQPRNQN 701: LFEDRYIPTE KE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)