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AT2G25850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : poly(A) polymerase 2
Curator
Summary (TAIR10)
Encodes a poly(A) polymerase. Located in the nucleus.
Computational
Description (TAIR10)
poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.6); Has 814 Blast hits to 806 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 260; Fungi - 214; Plants - 191; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-432-MONOMERBioGrid:2479EC:2.7.7.19eggNOG:COG5186
eggNOG:KOG2245EMBL:AF255297EMBL:AK230076EMBL:AY039974
EnsemblPlants:AT2G25850EnsemblPlants:AT2G25850.1EnsemblPlants:AT2G25850.4entrez:817127
ExpressionAtlas:Q0WLW1GeneID:817127GO:GO:0005634GO:GO:0005737
GO:GO:0006378GO:GO:0043631GO:GO:0046872hmmpanther:PTHR10682
hmmpanther:PTHR10682:SF22HOGENOM:HOG000204376IntAct:O82312InterPro:IPR007010
InterPro:IPR007012OMA:FRHCAFFPfam:PF01909Pfam:PF04926
Pfam:PF04928PhylomeDB:O82312ProteinModelPortal:O82312Proteomes:UP000006548
STRING:3702.AT2G25850.2SUPFAM:SSF81301SUPFAM:SSF81631TAIR:AT2G25850
tair10-symbols:PAPS2UniGene:At.14867UniProt:F4ISP8UniProt:Q0WLW1
Coordinates (TAIR10) chr2:-:11026048..11030440
Molecular Weight (calculated) 89358.70 Da
IEP (calculated) 5.47
GRAVY (calculated) -0.45
Length 787 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASSRR LSLKSVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)