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AT1G50180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.448
cytosol 0.413
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NB-ARC domain-containing disease resistance protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G48620.1); Has 13478 Blast hits to 13006 proteins in 446 species: Archae - 8; Bacteria - 393; Metazoa - 272; Fungi - 117; Plants - 12628; Viruses - 2; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
BioGrid:26665eggNOG:COG4886eggNOG:KOG4658EMBL:AC007980
EMBL:CP002684EnsemblPlants:AT1G50180EnsemblPlants:AT1G50180.1entrez:841440
Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:841440Genevisible:Q9SX38
GO:GO:0005524GO:GO:0006952GO:GO:0009506GO:GO:0043531
Gramene:AT1G50180.1hmmpanther:PTHR23155hmmpanther:PTHR23155:SF634InParanoid:Q9SX38
InterPro:IPR002182InterPro:IPR027417InterPro:IPR032675iPTMnet:Q9SX38
KEGG:ath:AT1G50180ncoils:CoilOMA:KDENQRIPaxDb:Q9SX38
Pfam:PF00931Pfam:Q9SX38PIR:B96538PRIDE:Q9SX38
PRO:PR:Q9SX38ProteinModelPortal:Q9SX38Proteomes:UP000006548RefSeq:NP_175437.1
SMR:Q9SX38STRING:3702.AT1G50180.1SUPFAM:SSF52058SUPFAM:SSF52540
TAIR:AT1G50180UniGene:At.52109UniProt:Q9SX38
Coordinates (TAIR10) chr1:+:18584235..18587136
Molecular Weight (calculated) 97280.30 Da
IEP (calculated) 6.58
GRAVY (calculated) -0.17
Length 857 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEAIVSVTV QKLGQLLLEE PLFLFGIGDQ VKQLQDELKR LNCFLKDADE KQHESERVRN WVAGIREASY DAEDILEAFF LKAESRKQKG MKRVLRRLAC
101: ILNEAVSLHS VGSEIREITS RLSKIAASML DFGIKESMGR EGLSLSDSLR EQRQSFPYVV EHNLVGLEQS LEKLVNDLVS GGEKLRVTSI CGMGGLGKTT
201: LAKQIFHHHK VRRHFDRFAW VYVSQDCRRR HVWQDIFLNL SYKDENQRIL SLRDEQLGEE LHRFLKRNKC LIVLDDIWGK DAWDCLKHVF PHETGSEIIL
301: TTRNKEVALY ADPRGVLHEP QLLTCEESWE LLEKISLSGR ENIEPMLVKK MEEIGKQIVV RCGGLPLAIT VLGGLLATKS TWNEWQRVCE NIKSYVSNGG
401: SSNGSKNMLV ADVLCLSYEY LPPHVKQCFL YFAHYPEDYE VHVGTLVSYC IAEGMVMPVK HTEAGTTVED VGQDYLEELV KRSMVMVGRR DIVTSEVMTC
501: RMHDLMREVC LQKAKQESFV QVIDSRDQDE AEAFISLSTN TSRRISVQLH GGAEEHHIKS LSQVSFRKMK LLRVLDLEGA QIEGGKLPDD VGDLIHLRNL
601: SVRLTNVKEL TSSIGNLKLM ITLDLFVKGQ LYIPNQLWDF PVGKCNPRDL LAMTSLRRLS INLSSQNTDF VVVSSLSKVL KRLRGLTINV PCEPMLPPVD
701: VTQLVSAFTN LCELELFLKL EKLPGEQSFS SDLGALRLWQ CGLVDDPFMV LEKLPNLKIL QLFEGSFVGS KLCCSKNLEN LEEWTVEDGA MMRLVTVELK
801: CCNKLKSVPE GTRFLKNLQE VEIGNRTKAF KDKLISGGED FYKVQHVPCV VFENCEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)