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AT5G43740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.965
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (CC-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 13811 Blast hits to 13486 proteins in 476 species: Archae - 7; Bacteria - 232; Metazoa - 616; Fungi - 57; Plants - 12812; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG4658EMBL:AB026651EMBL:AY050380
EMBL:BT000491EMBL:CP002688EnsemblPlants:AT5G43740EnsemblPlants:AT5G43740.1
EnsemblPlants:AT5G43740.2entrez:834394Gene3D:3.40.50.300Gene3D:3.80.10.10
GeneID:834394Genevisible:Q9FG90GO:GO:0005524GO:GO:0006952
GO:GO:0043531Gramene:AT5G43740.1Gramene:AT5G43740.2hmmpanther:PTHR23155
hmmpanther:PTHR23155:SF639HOGENOM:HOG000238348InParanoid:Q9FG90InterPro:IPR002182
InterPro:IPR027417InterPro:IPR032675KEGG:ath:AT5G43740ncoils:Coil
OMA:WIANECKPaxDb:Q9FG90Pfam:PF00931Pfam:Q9FG90
PhylomeDB:Q9FG90PRIDE:Q9FG90PRO:PR:Q9FG90ProteinModelPortal:Q9FG90
Proteomes:UP000006548RefSeq:NP_199187.1RefSeq:NP_851126.1SMR:Q9FG90
STRING:3702.AT5G43740.1SUPFAM:SSF52058SUPFAM:SSF52540TAIR:AT5G43740
UniGene:At.26584UniProt:Q9FG90
Coordinates (TAIR10) chr5:+:17566010..17568598
Molecular Weight (calculated) 98478.30 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.08
Length 862 amino acids
Sequence (TAIR10)
(BLAST)
001: MLGWLVIPWN QIFTAACGCF LSDRNYIHMM ESNLDALQKT MEELKNGRDD LLGRVSIEED KGLQRLAQVN GWLSRVQIVE SEFKDLLEAM SIETGRLCLL
101: GYCSEDCISS YNYGEKVSKM LEEVKELLSK KDFRMVAQEI IHKVEKKLIQ TTVGLDKLVE MAWSSLMNDE IGTLGLYGMG GVGKTTLLES LNNKFVELES
201: EFDVVIWVVV SKDFQFEGIQ DQILGRLRSD KEWERETESK KASLIYNNLE RKKFVLLLDD LWSEVDMTKI GVPPPTRENG SKIVFTTRST EVCKHMKADK
301: QIKVACLSPD EAWELFRLTV GDIILRSHQD IPALARIVAA KCHGLPLALN VIGKAMSCKE TIQEWSHAIN VLNSAGHEFP GMEERILPIL KFSYDSLKNG
401: EIKLCFLYCS LFPEDSEIPK EKWIEYWICE GFINPNRYED GGTNHGYDII GLLVRAHLLI ECELTDNVKM HDVIREMALW INSDFGKQQE TICVKSGAHV
501: RMIPNDINWE IVRTMSFTCT QIKKISCRSK CPNLSTLLIL DNRLLVKISN RFFRFMPKLV VLDLSANLDL IKLPEEISNL GSLQYLNISL TGIKSLPVGL
601: KKLRKLIYLN LEFTGVHGSL VGIAATLPNL QVLKFFYSCV YVDDILMKEL QDLEHLKILT ANVKDVTILE RIQGDDRLAS SIRSLCLEDM STPRVILSTI
701: ALGGLQQLAI LMCNISEIRI DWESKERREL SPTEILPSTG SPGFKQLSTV YINQLEGQRD LSWLLYAQNL KKLEVCWSPQ IEEIINKEKG MNITKLHRDI
801: VVPFGNLEDL ALRQMADLTE ICWNYRTLPN LRKSYINDCP KLPEDIFVPL LPEKSPSRFF FF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)