AT4G16890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.765 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS-LRR class), putative | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9500506..9505455 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 146919.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.83 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1301 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEIASSSGSR RYDVFPSFRG EDVRDSFLSH LLKELRGKAI TFIDDEIERS RSIGPELLSA IKESRIAIVI FSKNYASSTW CLNELVEIHK CYTNLNQMVI 0101: PIFFHVDASE VKKQTGEFGK VFEETCKAKS EDEKQSWKQA LAAVAVMAGY DLRKWPSEAA MIEELAEDVL RKTMTPSDDF GDLVGIENHI EAIKSVLCLE 0201: SKEARIMVGI WGQSGIGKST IGRALYSKLS IQFHHRAFIT YKSTSGSDVS GMKLRWEKEL LSEILGQKDI KIEHFGVVEQ RLKQQKVLIL LDDVDSLEFL 0301: KTLVGKAEWF GSGSRIIVIT QDRQLLKAHE IDLIYEVEFP SEHLALTMLC RSAFGKDSPP DDFKELAFEV AKLAGNLPLG LSVLGSSLKG RTKEWWMEMM 0401: PRLRNGLNGD IMKTLRVSYD RLHQKDQDMF LYIACLFNGF EVSYVKDLLK DNVGFTMLTE KSLIRITPDG YIEMHNLLEK LGREIDRAKS KGNPGKRRFL 0501: TNFEDIHEVV TEKTGTETLL GIRLPFEEYF STRPLLIDKE SFKGMRNLQY LEIGYYGDLP QSLVYLPLKL RLLDWDDCPL KSLPSTFKAE YLVNLIMKYS 0601: KLEKLWEGTL PLGSLKEMNL RYSNNLKEIP DLSLAINLEE LDLVGCKSLV TLPSSIQNAT KLIYLDMSDC KKLESFPTDL NLESLEYLNL TGCPNLRNFP 0701: AIKMGCSDVD FPEGRNEIVV EDCFWNKNLP AGLDYLDCLT RCMPCEFRPE QLAFLNVRGY KHEKLWEGIQ SLGSLEGMDL SESENLTEIP DLSKATKLES 0801: LILNNCKSLV TLPSTIGNLH RLVRLEMKEC TGLEVLPTDV NLSSLETLDL SGCSSLRSFP LISTNIVWLY LENTAIEEIP STIGNLHRLV RLEMKKCTGL 0901: EVLPTDVNLS SLETLDLSGC SSLRSFPLIS ESIKWLYLEN TAIEEIPDLS KATNLKNLKL NNCKSLVTLP TTIGNLQKLV SFEMKECTGL EVLPIDVNLS 1001: SLMILDLSGC SSLRTFPLIS TNIVWLYLEN TAIEEIPSTI GNLHRLVKLE MKECTGLEVL PTDVNLSSLM ILDLSGCSSL RTFPLISTRI ECLYLQNTAI 1101: EEVPCCIEDF TRLTVLMMYC CQRLKTISPN IFRLTRLELA DFTDCRGVIK ALSDATVVAT MEDHVSCVPL SENIEYIWDK LYHLPSKLNF NDVEFKFCCS 1201: NRIKECGVRL MYVSQEENNQ QTTRSEKRMR MTSGTSEEDI NLPYGLIVAD TGLAALNMEL SLGQGEPSSS TSLEGEALCV DYMITEEQDK GIPILFPVSG 1301: N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)