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AT4G16960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.669
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 19980 Blast hits to 13439 proteins in 492 species: Archae - 4; Bacteria - 689; Metazoa - 980; Fungi - 44; Plants - 17549; Viruses - 10; Other Eukaryotes - 704 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410J6H3EMBL:AL161545EMBL:CP002687
EMBL:Z97342EnsemblPlants:AT4G16960EnsemblPlants:AT4G16960.1entrez:827404
Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:827404
GO:GO:0005524GO:GO:0007165GO:GO:0043531Gramene:AT4G16960.1
hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20HOGENOM:HOG000064702InterPro:IPR000157
InterPro:IPR002182InterPro:IPR003593InterPro:IPR011713InterPro:IPR027417
InterPro:IPR032675KEGG:ath:AT4G16960OMA:KNDTIEMPfam:PF00931
Pfam:PF01582Pfam:PF07725Pfscan:PS50104PhylomeDB:O23536
PIR:C85189PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_193429.1
SMART:SM00255SMART:SM00382SMR:O23536STRING:3702.AT4G16960.1
SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT4G16960
UniGene:At.51236UniGene:At.74567UniProt:O23536
Coordinates (TAIR10) chr4:-:9546343..9551007
Molecular Weight (calculated) 118215.00 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.24
Length 1041 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSSSSPSS RRYDVFPSFS GVDVRKTFLS HLIEALDRRS INTFMDHGIV RSCIIADELI TAIREARISI VIFSENYASS TWCLNELVEI HKCHKDKDLD
0101: QMVIPVFYGV DPSHVRKQIG GFGDVFKKTC EDKPEDQKQR WVKALTDISN LAGEDLRNGP SEAAMVVKIA NDVSNKLFPL PKGFGDLVGI EDHIEAIKLK
0201: LCLESKEARI MVGIWGQSGI GKSTIGRALF SQLSSQFHHR AFITYKSTSG SDVSGMKLSW EKELLSEILG QKDIKIEHFG VVEQRLKHKK VLILLDDVDN
0301: LEFLRTLVGK AEWFGSGSRI IVITQDRQLL KAHEIDLIYE VKLPSQGLAL KMICQYAFGK YSPPDDFKEL AFEVAKLAGN LPLGLSVLGS SLKRRSKEEW
0401: MEMLAELQNG LNRDIMKTLR VSYVRLDPKD QDIFHYIAWL FNGWKVKSIK DFLGDGVNVN IRLKTLDDKS LIRLTPNDTI EMHNLLQKLA TEIDREESNG
0501: NPGKRRFLEN AEEILDVFTD NTVNENSFQG MLNLQYLKIH DHSWWQPRET RMRLPNGLVY LPRKLKWLWW DNCPLKRLPS NFKAEYLVEL RMVNSDLEKL
0601: WNGTQLLGSL KKMILRNSKY LKEIPDLSYA MNLERLDISD CEVLESFPSP LNSESLEYLD LLRCPKLRNF PETIMQISPY GIDIDVADCL WNKSLPGLDY
0701: LDCLRRCNPS KFLPEHLVNL KLRGNNMLEK LWEGVQSLGK LERMDLSECE NLIEIPDLSK ATNLVNLNLS NCKSLVTLPS TIGNHQKLYT LEMKECTGLK
0801: VLPMDVNLSS LHTVNLKGCS SLRFFPQISK SIAVLNLDDT AIEEVPCFEN FSRLIVLSMR GCKSLRRFPQ ISTSIQELNL ADTAIEQVPC FIENFSKLKI
0901: LNMSGCKKLK NISPNIFRLT WLKKVDFTDC GGVISALSDS TVVATMDDHY EKIEKMRCGV QLLHMTLGNS EEDFNLPCGQ TVTDTGLTAP NLELPLGRGE
1001: SSSISYPCLE GEAFSVDSMI TKRQAKEIPI AHRDEDSEAS W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)