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AT4G16860.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.596
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.
Computational
Description (TAIR10)
recognition of peronospora parasitica 4 (RPP4); FUNCTIONS IN: LRR domain binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 24682 Blast hits to 14766 proteins in 601 species: Archae - 8; Bacteria - 1131; Metazoa - 1818; Fungi - 127; Plants - 20736; Viruses - 36; Other Eukaryotes - 826 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410IGA8EMBL:AF440696EMBL:AK119099
EMBL:AL161545EMBL:AY120755EMBL:CP002687EMBL:Z97342
EnsemblPlants:AT4G16860EnsemblPlants:AT4G16860.1entrez:827395Gene3D:3.40.50.10140
Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:827395Genevisible:F4JNA9
GO:GO:0005524GO:GO:0006952GO:GO:0007165GO:GO:0009817
GO:GO:0030275GO:GO:0043531Gramene:AT4G16860.1hmmpanther:PTHR11017
hmmpanther:PTHR11017:SF20InParanoid:F4JNA9InterPro:IPR000157InterPro:IPR002182
InterPro:IPR011713InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675
KEGG:ath:AT4G16860ncoils:CoilOMA:WSEIGLWPaxDb:F4JNA9
Pfam:PF00931Pfam:PF01582Pfam:PF07725Pfscan:PS50104
PIR:C71436PRIDE:F4JNA9PRO:PR:F4JNA9PROSITE:PS50104
ProteinModelPortal:F4JNA9Proteomes:UP000006548RefSeq:NP_193420.2SMART:SM00255
SMR:F4JNA9STRING:3702.AT4G16860.1SUPFAM:SSF46785SUPFAM:SSF52058
SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT4G16860tair10-symbols:RPP4
UniGene:At.43768UniProt:F4JNA9
Coordinates (TAIR10) chr4:-:9488584..9495700
Molecular Weight (calculated) 130437.00 Da
IEP (calculated) 5.55
GRAVY (calculated) -0.13
Length 1147 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSSSSPSS RRYDVFPSFS GVDVRKTFLS HLIEALDRRS INTFMDHGIV RSCIIADALI TAIREARISI VIFSENYASS TWCLNELVEI HKCYKKGEQM
0101: VIPVFYGVDP SHVRKQIGGF GDVFKKTCED KPEDQKQRWV KALTDISNLA GEDLRNGPTE AFMVKKIAND VSNKLFPLPK GFGDFVGIED HIKAIKSILC
0201: LESKEARIMV GIWGQSGIGK STIGRALFSQ LSSQFHHRAF ITYKSTSGSD VSGMKLSWEK ELLSEILGQK DIKIDHFGVV EQRLKHKKVL ILLDDVDNLE
0301: FLKTLVGKAE WFGSGSRIIV ITQDKQLLKA HEIDLVYEVE LPSQGLALKM ISQYAFGKDS PPDDFKELAF EVAELVGSLP LGLSVLGSSL KGRDKDEWVK
0401: MMPRLRNDSD DKIEETLRVG YDRLNKKNRE LFKCIACFFN GFKVSNVKEL LEDDVGLTML ADKSLIRITP DGDIEMHNLL EKLGREIDRA KSKGNPAKRQ
0501: FLTNFEDIQE VVTEKTGTET VLGIRVPPTV LFSTRPLLVI NEESFKGMRN LQYLEIGHWS EIGLWSEIGL WSKIDLPQGL VYLPLKLKLL KWNYCPLKSL
0601: PSTFKAEYLV NLIMKYSKLE KLWEGTLPLG SLKKMDLGCS NNLKEIPDLS LAINLEELNL SKCESLVTLP SSIQNAIKLR TLYCSGVLLI DLKSLEGMCN
0701: LEYLSVDWSS MEGTQGLIYL PRKLKRLWWD YCPVKRLPSN FKAEYLVELR MENSDLEKLW DGTQPLGSLK EMYLHGSKYL KEIPDLSLAI NLERLYLFGC
0801: ESLVTLPSSI QNATKLINLD MRDCKKLESF PTDLNLESLE YLNLTGCPNL RNFPAIKMGC SYFEILQDRN EIEVEDCFWN KNLPAGLDYL DCLMRCMPCE
0901: FRPEYLTFLD VSGCKHEKLW EGIQSLGSLK RMDLSESENL TEIPDLSKAT NLKRLYLNGC KSLVTLPSTI GNLHRLVRLE MKECTGLELL PTDVNLSSLI
1001: ILDLSGCSSL RTFPLISTRI ECLYLENTAI EEVPCCIEDL TRLSVLLMYC CQRLKNISPN IFRLTSLMVA DFTDCRGVIK ALSDATVVAT MEDHVSCVPL
1101: SENIEYTCER FWDELYERNS RSIFSYKDED GDVYWVNWDL MMMLMLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)