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AT1G66980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : suppressor of npr1-1 constitutive 4
Curator
Summary (TAIR10)
Encodes SNC4 (suppressor of npr1-1, constitutive 4), an atypical receptor-like kinase with two predicted extracellular glycerophosphoryl diester phosphodiesterase domains.
Computational
Description (TAIR10)
suppressor of npr1-1 constitutive 4 (SNC4); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Protein kinase, catalytic domain (InterPro:IPR000719), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: SHV3-like 2 (TAIR:AT1G66970.1); Has 115599 Blast hits to 113492 proteins in 4573 species: Archae - 153; Bacteria - 13353; Metazoa - 42961; Fungi - 9619; Plants - 32809; Viruses - 285; Other Eukaryotes - 16419 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G66980-MONOMERBioGrid:28237EC:2.7.11.1EC:3.1.4.46
eggNOG:COG0584eggNOG:KOG1187eggNOG:KOG2258EMBL:AC007152
EMBL:CP002684EMBL:HM461758EnsemblPlants:AT1G66980EnsemblPlants:AT1G66980.1
entrez:843016Gene3D:2.60.120.200Gene3D:3.20.20.190GeneID:843016
Genevisible:D7SFH9GO:GO:0004674GO:GO:0005524GO:GO:0005886
GO:GO:0006071GO:GO:0006629GO:GO:0006968GO:GO:0008889
GO:GO:0016021GO:GO:0045087hmmpanther:PTHR23344hmmpanther:PTHR23344:SF8
HOGENOM:HOG000239205InParanoid:D7SFH9InterPro:IPR000719InterPro:IPR001245
InterPro:IPR004129InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320
InterPro:IPR017441InterPro:IPR017946InterPro:IPR030395KEGG:ath:AT1G66980
OMA:LIPLEHYPANTHER:PTHR23344PaxDb:D7SFH9Pfam:D7SFH9
Pfam:PF03009Pfam:PF07714Pfscan:PS50011Pfscan:PS51704
PIR:G96693PRIDE:D7SFH9PRO:PR:D7SFH9PROSITE:PS00107
PROSITE:PS00108PROSITE:PS50011PROSITE:PS51704ProteinModelPortal:D7SFH9
Proteomes:UP000006548RefSeq:NP_176870.2scanprosite:PS00107scanprosite:PS00108
SMART:SM00220SMR:D7SFH9STRING:3702.AT1G66980.1SUPFAM:SSF51695
SUPFAM:SSF56112TAIR:AT1G66980tair10-symbols:SNC4TMHMM:TMhelix
UniGene:At.15940UniProt:D7SFH9
Coordinates (TAIR10) chr1:-:24997491..25001961
Molecular Weight (calculated) 123831.00 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.06
Length 1118 amino acids
Sequence (TAIR10)
(BLAST)
0001: MNSQQSTRTK QMLQQSSTHL LCGVVLLQLF AAQVDAQRST SPWQTLSGDA PLVIARGGFS GLFPDSSLAA YQFAMVVSVA DVVLWCDVQL TKDGHGICFP
0101: DLNLANASNS EEVYPNRQKS YPVNGVTTKG WFPIDFSLTE LQKVLFSLIR GILSRSGKFD ENGYSISTVQ NVATQMKPAL FWLNVQHDEF YEQHNLSMSS
0201: FLLSTSRTVS IDFISSPEVN FFRKIAGGFG NNGPSFVFQF MGKEDFEPTT NRTYGSILSN LSFVKTFASG ILVPKSYILP LDDKQYLLPH TSLVQDAHKA
0301: GLKLYASGFA NDVDIAYNYS WDPVSEYLSF VDNGNFSVDG MLSDFPLTAS ASVDCFSHIG RNATKQVDFL VISKNGASGE YPGCTKLAYE KAIKDGSDVI
0401: DCPVQMSSDG IPFCSSSIDL VNSTTVGQTH LRNRSIIVPE ISSVAGIFTF SLTWHEIQSL TPAISNPFRE NGMSRNPNER NSGNLISLYE FLNLAKNSTS
0501: LSGILISLEN VVYLREKKGL DVVKVVLNRL TETGYIVGTL KVMIQSTTRL VLVDFKNQST YKTVYKIKET IGNITDSAIE DIKKFANAVV INKASVFPNS
0601: DSFLTGQTTN VLERLQKFQL PVYVELFQNE FVSQPFDFFA DETVEINAYI FGAGINGTIT EFPYTAARYK RNRCLGREEV PPYMLPVNPG GVLTLISTSS
0701: LPPAQDPNPI FTHDDVTEPP LPPVIAKSPT STLGTPSTIA KPLRNFLKVI RIVSWSVAGV VLFLVLLTLV FCFHRKRETR LRQQKLKALI PLEHYTYAQV
0801: KRITKSFAEV VGRGGFGIVY KGTLSDGRVV AVKVLKDTKG NGEDFINEVA TMSRTSHLNI VSLLGFCSEG SKRAIIYEFL ENGSLDKFIL GKTSVNMDWT
0901: ALYRIALGVA HGLEYLHHSC KTRIVHFDIK PQNVLLDDSF CPKVSDFGLA KLCEKKESIL SMLDTRGTIG YIAPEMISRV YGNVSHKSDV YSYGMLVLEI
1001: IGARNKEKAN QACASNTSSM YFPEWVYRDL ESCKSGRHIE DGINSEEDEL AKKMTLVGLW CIQPSPVDRP AMNRVVEMME GSLEALEVPP RPVLQQIPIS
1101: NLHESSILSE DVSVYTEG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)