AT5G40060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.520 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (NBS-LRR class) family; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46450.1); Has 17753 Blast hits to 12088 proteins in 513 species: Archae - 14; Bacteria - 834; Metazoa - 1404; Fungi - 80; Plants - 14776; Viruses - 4; Other Eukaryotes - 641 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16035246..16038730 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109432.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.95 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 968 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSLLCLDSK EVRMVGIWGP SGIGKTTIAR ALFARLSRHF HCSVYIDRAF VSKSMASYSR ANPDDYNMKL HLQETFLSTI LGKQNIKIDH LGALGERLKH 101: QKVLLFIDDL DQQVVLNALA GQIQWFGSGS RIIVVTNDKH LLISHGIENI YQVCLPSKEL ALEMLCRYAF RQNTPPDGFK KLAVEVVRHA GILPLGLNVL 201: GSYLRGRNKR YWMDMLPRLR KGLDGKIQKA LRVGYDGLDN KKDEAIFRHI ACLFNFEKVN DIRLLLADSD LNFNIGLENL VDKSLVNVRS NIVEMHCLLQ 301: EMGREIVRAQ SNEAGEREFL MDTEDICDVL DDNIGTKKML GISLDVDEID HELNVHEKAF QGMRNLRFLN IYTKALMSGQ KIRLHLPENF DYLPPKLKLL 401: CWDKYPMRCL PSSFRPENLV KLKMQESELE KLWEGVGSLT CLKDMDLEKS KNLKEIPDLS MATNLKTLNL KYCSSLVKIS SSIQNLNKLT KLNMEGCTNL 501: ETLPAGINLK SLHRLDLRGC SRLRMFPDIS NNISVLFLDK TSIEEFPSNL HLKKLFDLSM QQMNSEKLWE GVQPLTCLMK MLSPPLAKNF NTLYLSDIPS 601: LVELPCGIQN LKKLMELSIR RCKNLESLPT GANFKYLDYL DLSGCSKLRS FPDISSTISC LCLNRTGIEE VPSWIENFVR LTYLTMLECN KLKYVSLNIF 701: KLKHLDKADF SDCGTLTEVS WCNKTISVAA ATADNIQPKL LVSEASSSLC VQKSVVRFIN CFKLDQEALL QQEPVFKSLI LGGEEVPAYF NHRATGNSLV 801: IPLVPTSISL DFLGFRACAL VDVKAMSMPG RVDIQVSCRF RGSLKNHFDS ADHSHSLVAF HKASHLLIFD CRFALNNDSN PLNYAHMDIT FHLTTDSVSK 901: INACGIRFSE GVSPQKHLNG PSSIVHVCEA DESKLDNDRR HAHETEHGEE CGDSNVETVV SRKRIKIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)