AT1G59620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.806 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (CC-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes CW9. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CW9; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G58390.1); Has 13938 Blast hits to 13448 proteins in 451 species: Archae - 2; Bacteria - 565; Metazoa - 179; Fungi - 69; Plants - 13061; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21902627..21905527 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97860.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 842 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAETLLSFGV EKLWDLLVRE SDRFQGVKKQ FNELRSDLNK LRCFLEDADA KKHQSAMVSN TVKEVKEIVY DTEDIIETFL RKKQLGRTRG MKKRIKEFAC 101: VLPDRRKIAI DMEGLSKRIA KVICDMQSLG VQQENVKKLV GHLVEVEDSS QVVSITGMGG IGKTTLARQV FNHETVKSHF AQLAWVCVSQ QFTRKYVWQT 201: ILRKVGPEYI KLEMTEDELQ EKLFRLLGTR KALIVLDDIW REEDWDMIEP IFPLGKGWKV LLTSRNEGVA LRANPNGFIF KPDCLTPEES WTIFRRIVFP 301: GENTTEYKVD EKMEELGKQM IKHCGGLPLA LKVLGGLLVV HFTLDEWKRI YGNIKSHIVG GTSFNDKNMS SVYHILHLSF EELPIYLKHC FLYLAQFPED 401: FTIDLEKLSY YWAAEGMPRP RYYDGATIRK VGDGYIEELV KRNMVISERD ARTRRFETCH LHDIVREVCL LKAEEENLIE TENSKSPSKP RRLVVKGGDK 501: TDMEGKLKNP KLRSLLFIEE LGGYRGFEVW FTRLQLMRVL DLHGVEFGGE LPSSIGLLIH LRYLSLYRAK ASHLPSSMQN LKMLLYLNLC VQESCYIYIP 601: NFLKEMLELK YLSLPLRMDD KSMGEWGDLQ FMTRLRALSI YIRGRLNMKT LSSSLSKLRD LENLTICYYP MYAPMSGIEG LVLDCDQLKH LNLRIYMPRL 701: PDEQHFPWHL RNISLAECCL KEDPMPILEK LLQLNEVSLS HQSFCGKRMV CSDGGFPQLQ KLDLCGLEEW EEWIVEEGSM PRLHKLTIRN DPKLKELPDG 801: LKFITSLKEV HVILNNWDFK KKLSRGGEDY YKVQHIPLVR FL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)