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AT5G46470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.723
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Encodes RPS6 (RESISTANT TO P. SYRINGAE 6), a member of the TIR-NBS-LRR class resistance protein.
Computational
Description (TAIR10)
RESISTANT TO P. SYRINGAE 6 (RPS6); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to bacterium, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
DNASU:834690eggNOG:COG4886eggNOG:ENOG410IGA8EMBL:AB019223
EMBL:CP002688EnsemblPlants:AT5G46470EnsemblPlants:AT5G46470.1entrez:834690
Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:834690
Genevisible:F4KHH8GO:GO:0005524GO:GO:0007165GO:GO:0042742
GO:GO:0043531hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20HOGENOM:HOG000064702
InParanoid:Q9FHF8InterPro:IPR000157InterPro:IPR002182InterPro:IPR003593
InterPro:IPR011713InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675
KEGG:ath:AT5G46470OMA:HIHESSFPaxDb:F4KHH8Pfam:F4KHH8
Pfam:PF00931Pfam:PF01582Pfam:PF07725Pfscan:PS50104
PRIDE:F4KHH8PRO:PR:F4KHH8PROSITE:PS50104ProteinModelPortal:F4KHH8
Proteomes:UP000006548RefSeq:NP_199459.2SMART:SM00255SMART:SM00382
STRING:3702.AT5G46470.1SUPFAM:SSF46785SUPFAM:SSF52058SUPFAM:SSF52200
SUPFAM:SSF52540TAIR:AT5G46470tair10-symbols:RPS6UniGene:At.49133
UniGene:At.68652UniProt:F4KHH8
Coordinates (TAIR10) chr5:+:18842701..18846809
Molecular Weight (calculated) 128279.00 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.17
Length 1127 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSSSSSSR NWSYHVFPSF SGEDVRNTFL SHFLKELDRK LIISFKDNEI ERSQSLDPEL KHGIRNSRIA VVVFSKTYAS SSWCLNELLE IVKCKKEFGQ
0101: LVIPIFYNLD PSHVRKQTGD FGKIFEKTCR NKTVDEKIRW KEALTDVANI LGYHIVTWDN EASMIEEIAN DILGKMNISP SNDFEDLVGI EDHITKMSSL
0201: LHLESEEVRM VGIWGPSGIG KTTIARALFS RLSCQFQSSV FIDKVFISKS MEVYSGANLV DYNMKLHLQR AFLAEIFDKK DIKIHVGAME KMVKHRKALI
0301: VIDDLDDQDV LDALADQTQW FGSGSRIIVV TENKHFLRAN RIDHIYKVCL PSNALALEMF CRSAFKKNSP PDDFLELSSE VALRAGNLPL GLNVLGSNLR
0401: GINKGYWIDM LPRLQGLDGK IGKTLRVSYD GLNNRKDEAI FRHIACIFNG EKVSDIKLLL ANSNLDVNIG LKNLVDRSLI CERFNTLEMH SLLQELGKEI
0501: VRTQSNQPGE REFLVDLKDI CDVLEHNTGT KKVLGITLDI DETDELHIHE SSFKGMHNLL FLKIYTKKLD QKKKVRWHLP ERFDYLPSRL RLLRFDRYPS
0601: KCLPSNFHPE NLVKLQMQQS KLEKLWDGVH SLAGLRNMDL RGSRNLKEIP DLSMATNLET LKLSSCSSLV ELPSSIQYLN KLNDLDMSYC DHLETIPSGV
0701: NLKSLDRLNL SGCSRLKSFL DIPTNISWLD IGQTADIPSN LRLQNLDELI LCERVQLRTP LMTMLSPTLT RLTFSNNPSF VEVPSSIQNL YQLEHLEIMN
0801: CRNLVTLPTG INLDSLISLD LSHCSQLKTF PDISTNISDL NLSYTAIEEV PLSIEKLSLL CYLDMNGCSN LLCVSPNISK LKHLERADFS DCVELTEASW
0901: NGSSSEMVKL LPADNFSTVK LNFINCFKLD LTALIQNQTF FMQLILTGEE VPSYFTHRTS GDSISLPHIS VCQSFFSFRG CTVIDVDSFS TISVSFDIEV
1001: CCRFIDRFGN HFDSTDFPGY FITTKLGGHL VVFDCYFPFN EEFTTFLDGQ FNYDHVDIQF RLTNDNSQLK LKGCGILLSE DVPSLDNRPC SPNILPGVCE
1101: DSALERRSFR TKMRMMRMRL LKKLLNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)