suba logo
AT5G66900.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.945
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (CC-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G66910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410IK3AEMBL:AB010700EMBL:CP002688
EnsemblPlants:AT5G66900EnsemblPlants:AT5G66900.1entrez:836824Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:836824Genevisible:Q9FKZ1GO:GO:0005524
GO:GO:0006952GO:GO:0043531Gramene:AT5G66900.1hmmpanther:PTHR24209
hmmpanther:PTHR24209:SF15HOGENOM:HOG000033825InParanoid:Q9FKZ1InterPro:IPR001611
InterPro:IPR002182InterPro:IPR008808InterPro:IPR027417InterPro:IPR032675
KEGG:ath:AT5G66900ncoils:CoilOMA:PVFRDLCPaxDb:Q9FKZ1
Pfam:PF00931Pfam:PF05659Pfam:PF13855Pfam:Q9FKZ1
Pfscan:PS51153PhylomeDB:Q9FKZ1PRIDE:Q9FKZ1PRO:PR:Q9FKZ1
PROSITE:PS51153ProteinModelPortal:Q9FKZ1Proteomes:UP000006548RefSeq:NP_201491.1
SMR:Q9FKZ1STRING:3702.AT5G66900.1SUPFAM:SSF52058SUPFAM:SSF52540
TAIR:AT5G66900UniGene:At.28841UniProt:Q9FKZ1
Coordinates (TAIR10) chr5:-:26714931..26717757
Molecular Weight (calculated) 92250.10 Da
IEP (calculated) 5.30
GRAVY (calculated) -0.14
Length 809 amino acids
Sequence (TAIR10)
(BLAST)
001: MNDWASLGIG SIGEAVFSKL LKVVIDEAKK FKAFKPLSKD LVSTMEILFP LTQKIDSMQK ELDFGVKELK ELRDTIERAD VAVRKFPRVK WYEKSKYTRK
101: IERINKDMLK FCQIDLQLLQ HRNQLTLLGL TGNLVNSVDG LSKRMDLLSV PAPVFRDLCS VPKLDKVIVG LDWPLGELKK RLLDDSVVTL VVSAPPGCGK
201: TTLVSRLCDD PDIKGKFKHI FFNVVSNTPN FRVIVQNLLQ HNGYNALTFE NDSQAEVGLR KLLEELKENG PILLVLDDVW RGADSFLQKF QIKLPNYKIL
301: VTSRFDFPSF DSNYRLKPLE DDDARALLIH WASRPCNTSP DEYEDLLQKI LKRCNGFPIV IEVVGVSLKG RSLNTWKGQV ESWSEGEKIL GKPYPTVLEC
401: LQPSFDALDP NLKECFLDMG SFLEDQKIRA SVIIDMWVEL YGKGSSILYM YLEDLASQNL LKLVPLGTNE HEDGFYNDFL VTQHDILREL AICQSEFKEN
501: LERKRLNLEI LENTFPDWCL NTINASLLSI STDDLFSSKW LEMDCPNVEA LVLNLSSSDY ALPSFISGMK KLKVLTITNH GFYPARLSNF SCLSSLPNLK
601: RIRLEKVSIT LLDIPQLQLS SLKKLSLVMC SFGEVFYDTE DIVVSNALSK LQEIDIDYCY DLDELPYWIS EIVSLKTLSI TNCNKLSQLP EAIGNLSRLE
701: VLRLCSSMNL SELPEATEGL SNLRFLDISH CLGLRKLPQE IGKLQNLKKI SMRKCSGCEL PESVTNLENL EVKCDEETGL LWERLKPKMR NLRVQEEEIE
801: HNLNLLQMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)