AT5G22690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.901 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46470.1); Has 15956 Blast hits to 11549 proteins in 387 species: Archae - 12; Bacteria - 480; Metazoa - 758; Fungi - 10; Plants - 14383; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:7541369..7544888 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115173.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.84 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1008 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MALSYRNWLY DVFPSFSGED VRVTFLSHFL KELDRKLISV FKDNDIQRSQ SLDPELKLAI RDSRIAIVVF SKNYAASSWC LDELLEIVKC KEEFGQIVIP 0101: VFYGLDPCHV RKQSGEFGIV FENTCQTKTD DEIQKWRRAL TDVANILGFH SSNWDNEATM VEDIANDVLA KLNLTTTSND FEGFVGIEGH IAKISLMLCL 0201: ECKQVRMFGI WGPSGIGKTT IARALFSRIS RHFQGSVFLD RAFVSKSMEI YSGGNVDNYN AKLHLQGKFL SEILRAKDIK ISNLGVVGER LKHMKVLIFI 0301: DDLDDQVVLD ALASKPHWFG CGSRIIVITK DKQFFRAHGI GLFYEVGLPS DKLALEMFSQ SAFRQNSPPP GFTELASEVS KRSGNLPLAL NVLGSHLRGR 0401: DKEDWIDMLP RLRKGLDGKI EKILRVGYDE LSNKDDKAIF RLIACLFNGA EISYIKLLLA DSNLGVTIGL KNLVDKSLIR IGCDTVEMHS MLQEMGREIV 0501: REQSIYEPGE REFLVDSTDI LDVLNDNTGT KKVLGISFDM SEIEELHIHK RAFKRMPNLR FLRFYKKLGK QSKEARLHLQ EGFDKFFPPK LKLLSWDDYP 0601: MRRMPSNFHA GYLVVLRMQH SKLEKLWQGV QPLTCLREMQ LWGSKKLKEI PDLSLATNLE TLYLNDCSSL VELPSSIKNL NKLWDLGMKG CEKLELLPTD 0701: INLKSLYRLD LGRCSRLKSF PDISSNISEL YLNRTAIEEV PWWIQKFSRL KRLRMRECKK LKCISPNISK LKHLEMLDFS NCIATTEEEA LVQQQSVLKY 0801: LIFPGGQVPL YFTYQATGSS LAIPLSLHQS SLSQQLLGFR ACVVLDAESM SSELYVIDIK VCCRLSGKRS NLFDSADCRD AFFTPQMDSH LVIFDCCFPL 0901: NQDNVRLAEL NNDKVVTEFH FTSISRCKIT GVGVRFLRDC SLPENHHNDP NILAPNCGCP ETEHSDEYGE FGVETKRSRK RKRITLRTAQ ETIDLPYLQI 1001: REEQRMSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)