suba logo
AT1G63750.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.555
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G58120.1); Has 21268 Blast hits to 16638 proteins in 741 species: Archae - 13; Bacteria - 2093; Metazoa - 2188; Fungi - 103; Plants - 16269; Viruses - 13; Other Eukaryotes - 589 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G63750EnsemblPlants:AT1G63750.1EnsemblPlants:AT1G63750.2
entrez:842679ExpressionAtlas:F4I3Q8Gene3D:3.40.50.300Gene3D:3.80.10.10
GeneID:842679GO:GO:0005524GO:GO:0016021GO:GO:0043531
Gramene:AT1G63750.1Gramene:AT1G63750.2hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20
InterPro:IPR001611InterPro:IPR002182InterPro:IPR003593InterPro:IPR011713
InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675KEGG:ath:AT1G63750
Pfam:PF00931Pfam:PF07725Pfscan:PS51450PROSITE:PS51450
Proteomes:UP000006548RefSeq:NP_001077768.1RefSeq:NP_176562.2SMART:SM00382
SMR:F4I3Q8STRING:3702.AT1G63750.3SUPFAM:SSF46785SUPFAM:SSF52058
SUPFAM:SSF52540TAIR:AT1G63750TMHMM:TMhelixUniGene:At.50001
UniProt:F4I3Q8
Coordinates (TAIR10) chr1:+:23652263..23655333
Molecular Weight (calculated) 109102.00 Da
IEP (calculated) 5.00
GRAVY (calculated) -0.29
Length 964 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKKIARDVS YKLNATPSKD FEDMMGLEAH LKKIQSLLRL DYKDEALIIG ISGPAGIGKS TIARALESRL SDRFQLTCFM DLRGSENNGL HDYGQQLRLQ
101: EQLLAKVLNQ DGTRICHLGV LQQRLSDLRV LIILDDVSDI KQLKALAKET TWFGPGSRII VTTENKDLLQ QRGIDSTYHV GFPSREEALE IFCKFAFEQS
201: SPPHAFEKLA ARITHLCGNL PLGLCVMGSS LFGKKQDEWE FVVHRLETNP GQEIDDVLRV GYERLHENDQ MLFLHIAIFF NYRDRDLVEA MLADDGNLDV
301: GNWLKFLINK SLIEIYRTGQ IVMHKLLQQV GRQAIRRQEP WKRQILINAN EICDLLRYEK GTSCNVSGIS FDTSGISEVT ICDGAFKRLH DLRFLHVYKS
401: RDDGNNRVHI PEKVEFPPRL RLLHWAAYPS KSLPPTFNLE CLVELNMRES LVEKLWEGTQ HLKNLKYMDL TESKNLKELP DLSNATNLEY FYLDNCESLV
501: EIPSSFAHLH KLEWLEMNNC INLQVIPAHM NLTSVKQVNM KGCSRLRKFP VISRHIEALD ISDNTELEDM PASIASWCHL VYLDMSHNEK LQGLTQLPTS
601: LRHLNLSYTD IESIPDCIKA LHQLEELCLS GCTRLASLPD LPCSIKALEA EDCESLESVS SPLYTPSARL SFTNCFKLGG EAREAIIRRS SDSTGSVLLP
701: GREVPAEFDH RAQGNSLSIL LPLGGNSQFM VCVVISPRHD ITKMSNESEL LCRINGESCS YDEEFDIVDV SNCRREHLFI FHSGLLRMGR SEAGTEMVFE
801: FSSALQEDFD IIECGVKIWT PQSIRRGYLA FGEDDDGTDG VICDTEDVDQ MTDETKGGNN GGSSDEEDGK IHMYSHESGE TSESESESEK EDESEPRETS
901: EADADGDYES VSRKRAKKTT SASTDLKLVS IDYLRISNLL KYIFLILVLL LILVVLMSMR LFLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)