AT2G24600.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G10340.1); Has 23294 Blast hits to 11989 proteins in 581 species: Archae - 40; Bacteria - 1638; Metazoa - 13006; Fungi - 1656; Plants - 2370; Viruses - 127; Other Eukaryotes - 4457 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:10452430..10454414 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 60646.10 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.53 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||
Length | 548 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MHPIFDAILQ NDLPAFLGLV EARESSLEER SEEQNTNNTV LHVAAKLGHR ELVAKIIELR PSLLSSRNAY GDTPLHLAAL LGDVNIVMQM LDTGLELYSA 101: RNNKNQTPLH LAFVSIFMEA AKFIVEKTNS VDLDELNFAL SSGSTCIVGI ILERFPELAR KNAWEVEDGS RSTLLHYACD KGDLELTSIL LGLNQGLEEA 201: LNSKGLSPLH LAVQRGSVII LEEFMDKSPL SFCVRTPSKE TVFHLAARNK NTDAFVFMAE NLGTSSPILL KKKDQQGNTV LHIAASVSCG SPLIRYIVGK 301: KIIDIRDRNN MGYRAYHLLP RQAQDYEFIS SYLRCDTKTS EEVDSKKAER NEPHIGHSEV IRLLKLIEIS TSEIAERKKS KKHHVKRGHK SLEHEMHIEA 401: LQNARNTIAI VAVLIASVSY AGGINPPGGV YQDGPWKGKS LVGFMATAYV AASLVTIPHF PGTRWLFPVI ISVAGGSLTV LFSYLGVETI SHWFKKMNRV 501: GRGLPIYFIK NNRVEDIPAI AKNEGEMPSL ARTNSDLAAS EGSGYFTY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)